Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yafN-yafO (relBE)/YafO-YafN
Location 1017878..1018572 Replicon chromosome
Accession NZ_CP113504
Organism Pectobacterium brasiliense strain 21PCA_AGRO2

Toxin (Protein)


Gene name yafO Uniprot ID -
Locus tag OWC53_RS04710 Protein ID WP_039283807.1
Coordinates 1018168..1018572 (+) Length 135 a.a.

Antitoxin (Protein)


Gene name yafN Uniprot ID -
Locus tag OWC53_RS04705 Protein ID WP_040033545.1
Coordinates 1017878..1018171 (+) Length 98 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
OWC53_RS04690 (OWC53_04685) 1014867..1016183 - 1317 WP_268198371.1 cytosine permease -
OWC53_RS04695 (OWC53_04690) 1016198..1016887 - 690 WP_039283802.1 LuxR C-terminal-related transcriptional regulator -
OWC53_RS04700 (OWC53_04695) 1016917..1017330 - 414 WP_039272788.1 GNAT family N-acetyltransferase -
OWC53_RS04705 (OWC53_04700) 1017878..1018171 + 294 WP_040033545.1 type I toxin-antitoxin system antitoxin YafN Antitoxin
OWC53_RS04710 (OWC53_04705) 1018168..1018572 + 405 WP_039283807.1 type II toxin-antitoxin system YafO family toxin Toxin
OWC53_RS04715 (OWC53_04710) 1018903..1021146 + 2244 WP_040033546.1 ferric-rhodotorulic acid/ferric-coprogen receptor FhuE -
OWC53_RS04720 (OWC53_04715) 1021234..1022583 - 1350 WP_205532609.1 enolase C-terminal domain-like protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

mRNA interferase toxin YafO

(29-132)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 135 a.a.        Molecular weight: 15596.98 Da        Isoelectric Point: 6.6368

>T265848 WP_039283807.1 NZ_CP113504:1018168-1018572 [Pectobacterium brasiliense]
MSIRIFKSTLLCQQLSQQELDDLVADFLSYKQDGVLPDTFGRDALYDDDRTYPLVREEQVAHIHLADANAPFPKFLRQFK
RTSDKAHLVYCQSAMDPDIYLLIIILKPEAHKMARDNNNMHKVGMMAEAFRMKY

Download         Length: 405 bp

Antitoxin


Download         Length: 98 a.a.        Molecular weight: 10835.31 Da        Isoelectric Point: 5.1651

>AT265848 WP_040033545.1 NZ_CP113504:1017878-1018171 [Pectobacterium brasiliense]
MERILAEKSINITELRKNPAKYFIDEPVAVLSNNRPAGYMVSAKVFEALIDLLEDKQGSVHTAARFRPTAERLSNIADNG
VTLLKNASDKDLNEFTE

Download         Length: 294 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References