264721

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yefM-yoeB (relBE)/YoeB-YefM
Location 1653490..1653992 Replicon chromosome
Accession NZ_CP110999
Organism Escherichia coli strain J53-p133

Toxin (Protein)


Gene name yoeB Uniprot ID U9YDH0
Locus tag ORI88_RS07915 Protein ID WP_000767829.1
Coordinates 1653738..1653992 (+) Length 85 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID S1Q063
Locus tag ORI88_RS07910 Protein ID WP_001259255.1
Coordinates 1653490..1653741 (+) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
ORI88_RS07885 (1648668) 1648668..1649735 - 1068 WP_000080105.1 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB -
ORI88_RS07890 (1649735) 1649735..1650805 - 1071 WP_000108941.1 histidinol-phosphate transaminase -
ORI88_RS07895 (1650802) 1650802..1652106 - 1305 WP_000009594.1 histidinol dehydrogenase -
ORI88_RS07900 (1652112) 1652112..1653011 - 900 WP_000131782.1 ATP phosphoribosyltransferase -
ORI88_RS07905 (1653157) 1653157..1653207 - 51 WP_001364200.1 his operon leader peptide -
ORI88_RS07910 (1653490) 1653490..1653741 + 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM Antitoxin
ORI88_RS07915 (1653738) 1653738..1653992 + 255 WP_000767829.1 type II toxin-antitoxin system mRNA interferase toxin YoeB Toxin
ORI88_RS07920 (1654075) 1654075..1654899 + 825 WP_000754737.1 SDR family oxidoreductase -
ORI88_RS07925 (1654945) 1654945..1655874 + 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
ORI88_RS07930 (1656089) 1656089..1656151 + 63 WP_010723108.1 membrane protein YoeI -
ORI88_RS07935 (1656141) 1656141..1657499 + 1359 WP_000019197.1 putrescine/proton symporter PlaP -
ORI88_RS07940 (1657678) 1657678..1658736 + 1059 WP_000492339.1 thiosulfate utilization transporter TsuA/YeeE -
ORI88_RS07945 (1658750) 1658750..1658977 + 228 WP_000234896.1 sulfurtransferase TusA -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(2-84)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-73)


Sequences

Toxin        


Download         Length: 85 a.a.        Molecular weight: 10183.58 Da        Isoelectric Point: 8.0353

>T264721 WP_000767829.1 NZ_CP110999:1653738-1653992 [Escherichia coli]
VKLIWSEESWDDYLYWQETDKRIVKKINELIKDTRRTPFEGKGKPEPLKHNLSGFWSRRITEEHRLVYAVTDDSLLIAAC
RYHY

Download         Length: 255 bp

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9307.58 Da        Isoelectric Point: 4.7954

>AT264721 WP_001259255.1 NZ_CP110999:1653490-1653741 [Escherichia coli]
MRTISYSEARQNLSATMMKAVEDHAPILITRQNGEACVLMSLEEYNSLEETAYLLRSPANARRLMDSIDSLKSGKGTEKD
IIE

Download         Length: 252 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 6NY6
PDB 2A6S
PDB 6OXA
PDB 2A6R
PDB 4V8X
PDB 6OTR
PDB 6OXI
PDB 2A6Q

Antitoxin

Source ID Structure
AlphaFold DB A0A7U9LNR0

References