Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) phd-doc/Doc-RelB
Location 326533..327119 Replicon chromosome
Accession NZ_CP110957
Organism Klebsiella pneumoniae subsp. pneumoniae strain LC-395/19

Toxin (Protein)


Gene name doc Uniprot ID W8VD46
Locus tag NPY03_RS01510 Protein ID WP_002920800.1
Coordinates 326751..327119 (+) Length 123 a.a.

Antitoxin (Protein)


Gene name phd Uniprot ID A0A0H3GZM4
Locus tag NPY03_RS01505 Protein ID WP_002920802.1
Coordinates 326533..326754 (+) Length 74 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NPY03_RS01485 (NPY03_01485) 322690..323616 + 927 WP_002920807.1 high-affinity branched-chain amino acid ABC transporter permease LivH -
NPY03_RS01490 (NPY03_01490) 323613..324890 + 1278 WP_002920806.1 branched chain amino acid ABC transporter permease LivM -
NPY03_RS01495 (NPY03_01495) 324887..325654 + 768 WP_002920803.1 high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG -
NPY03_RS01500 (NPY03_01500) 325656..326369 + 714 WP_004145133.1 high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF -
NPY03_RS01505 (NPY03_01505) 326533..326754 + 222 WP_002920802.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
NPY03_RS01510 (NPY03_01510) 326751..327119 + 369 WP_002920800.1 type II toxin-antitoxin system death-on-curing family toxin Toxin
NPY03_RS01515 (NPY03_01515) 327392..328708 + 1317 WP_002920796.1 sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB -
NPY03_RS01520 (NPY03_01520) 328815..329702 + 888 WP_002920792.1 sn-glycerol-3-phosphate ABC transporter permease UgpA -
NPY03_RS01525 (NPY03_01525) 329699..330544 + 846 WP_002920789.1 sn-glycerol-3-phosphate ABC transporter permease UgpE -
NPY03_RS01530 (NPY03_01530) 330546..331616 + 1071 WP_002920787.1 sn-glycerol-3-phosphate import ATP-binding protein UgpC -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
inside Prophage - - 323613..332353 8740


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Fido domain

(13-86)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-49)


Sequences

Toxin        


Download         Length: 123 a.a.        Molecular weight: 13552.92 Da        Isoelectric Point: 8.6410

>T264590 WP_002920800.1 NZ_CP110957:326751-327119 [Klebsiella pneumoniae subsp. pneumoniae]
MTLQIISAEEIIQFHDRLLRVTPGVAGMPDPGRAEAIMYRVLNKIEYEGVTDVWRLAAMHLLAISRGHIFNDGNKRTALF
ITLLFLKRNGIILPANPDFVGMTVEAAAGQLTLEQIVARLRG

Download         Length: 369 bp

Antitoxin


Download         Length: 74 a.a.        Molecular weight: 8181.18 Da        Isoelectric Point: 4.7769

>AT264590 WP_002920802.1 NZ_CP110957:326533-326754 [Klebsiella pneumoniae subsp. pneumoniae]
MRTVNYSEARQNLADVLESAVTGVPVTITRRGHKSAVIISAEEFERYQTARMDDEFAAIMAVHGDEIRELADK

Download         Length: 222 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0H3GUD1

Antitoxin

Source ID Structure
AlphaFold DB A0A0H3GZM4

References