Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) higBA (relBE)/HigB-HigA
Location 31790..32445 Replicon chromosome
Accession NZ_CP110873
Organism Enterobacter kobei strain SCLZS19

Toxin (Protein)


Gene name higB Uniprot ID -
Locus tag OQE50_RS00150 Protein ID WP_228037371.1
Coordinates 31790..32029 (+) Length 80 a.a.

Antitoxin (Protein)


Gene name higA Uniprot ID -
Locus tag OQE50_RS00155 Protein ID WP_023331687.1
Coordinates 32026..32445 (+) Length 140 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
OQE50_RS00130 (27380) 27380..28468 + 1089 WP_032635252.1 cellulase family glycosylhydrolase -
OQE50_RS00135 (28371) 28371..29555 - 1185 WP_193970929.1 multidrug efflux MFS transporter EmrD -
OQE50_RS00140 (29731) 29731..30564 - 834 WP_047343396.1 EamA family transporter -
OQE50_RS00145 (30627) 30627..31073 - 447 WP_014881927.1 GNAT family N-acetyltransferase -
OQE50_RS00150 (31790) 31790..32029 + 240 WP_228037371.1 type II toxin-antitoxin system HigB family toxin Toxin
OQE50_RS00155 (32026) 32026..32445 + 420 WP_023331687.1 helix-turn-helix domain-containing protein Antitoxin
OQE50_RS00160 (32595) 32595..32693 + 99 WP_023331688.1 ilvB operon leader peptide IvbL -
OQE50_RS00165 (32800) 32800..34488 + 1689 WP_179120399.1 acetolactate synthase large subunit -
OQE50_RS00170 (34492) 34492..34779 + 288 WP_010426528.1 acetolactate synthase small subunit -
OQE50_RS00175 (34862) 34862..35455 + 594 WP_014881931.1 transcriptional regulator UhpA -
OQE50_RS00180 (35452) 35452..36957 + 1506 WP_047028137.1 signal transduction histidine-protein kinase/phosphatase UhpB -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, mRNA interferase HigB

(3-68)

Antitoxin

Cro/C1-type helix-turn-helix domain

(84-136)


Sequences

Toxin        


Download         Length: 80 a.a.        Molecular weight: 9484.06 Da        Isoelectric Point: 10.4651

>T264411 WP_228037371.1 NZ_CP110873:31790-32029 [Enterobacter kobei]
MGRTIEKSHCPTPVALRKIFPTLDNLKYLDKHYVIDIANNNLRIVALIFFESQKFYVRHVFTNKEYDRFTEKHRTKGKK

Download         Length: 240 bp

Antitoxin


Download         Length: 140 a.a.        Molecular weight: 15561.18 Da        Isoelectric Point: 5.6761

>AT264411 WP_023331687.1 NZ_CP110873:32026-32445 [Enterobacter kobei]
MMIVADAMKATHALVAAVPLLGEHPNEKDYQDALELVEYLLMNEPGSPLLDIVCARIRRYEANRPEIVALRQEMESVPVG
IAVLRTLMDQYKLTISDFQDEIGSKSMVSRVLNGQRQLTLNHIKKLAARFGVSPALFIE

Download         Length: 420 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References