Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | yefM-yoeB (relBE)/YoeB-YefM |
Location | 1790634..1791136 | Replicon | chromosome |
Accession | NZ_CP110814 | ||
Organism | Escherichia coli strain THB42-F4 |
Toxin (Protein)
Gene name | yoeB | Uniprot ID | U9YDH0 |
Locus tag | N0552_RS08500 | Protein ID | WP_000767829.1 |
Coordinates | 1790882..1791136 (+) | Length | 85 a.a. |
Antitoxin (Protein)
Gene name | yefM | Uniprot ID | S1Q063 |
Locus tag | N0552_RS08495 | Protein ID | WP_001259255.1 |
Coordinates | 1790634..1790885 (+) | Length | 84 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
N0552_RS08470 (1785812) | 1785812..1786879 | - | 1068 | WP_000080105.1 | bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB | - |
N0552_RS08475 (1786879) | 1786879..1787949 | - | 1071 | WP_000108941.1 | histidinol-phosphate transaminase | - |
N0552_RS08480 (1787946) | 1787946..1789250 | - | 1305 | WP_000009594.1 | histidinol dehydrogenase | - |
N0552_RS08485 (1789256) | 1789256..1790155 | - | 900 | WP_000131782.1 | ATP phosphoribosyltransferase | - |
N0552_RS08490 (1790301) | 1790301..1790351 | - | 51 | WP_001364200.1 | his operon leader peptide | - |
N0552_RS08495 (1790634) | 1790634..1790885 | + | 252 | WP_001259255.1 | YoeB-YefM toxin-antitoxin system antitoxin YefM | Antitoxin |
N0552_RS08500 (1790882) | 1790882..1791136 | + | 255 | WP_000767829.1 | type II toxin-antitoxin system mRNA interferase toxin YoeB | Toxin |
N0552_RS08505 (1791219) | 1791219..1792043 | + | 825 | WP_000754737.1 | SDR family oxidoreductase | - |
N0552_RS08510 (1792089) | 1792089..1793018 | + | 930 | WP_000803351.1 | LysR substrate-binding domain-containing protein | - |
N0552_RS08515 (1793233) | 1793233..1793295 | + | 63 | WP_010723108.1 | membrane protein YoeI | - |
N0552_RS08520 (1793285) | 1793285..1794643 | + | 1359 | WP_000019197.1 | putrescine/proton symporter PlaP | - |
N0552_RS08525 (1794822) | 1794822..1795880 | + | 1059 | WP_000492339.1 | thiosulfate utilization transporter TsuA/YeeE | - |
N0552_RS08530 (1795894) | 1795894..1796121 | + | 228 | WP_000234896.1 | sulfurtransferase TusA | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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