Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | higBA (relBE)/HigB-HigA |
| Location | 4779931..4780685 | Replicon | chromosome |
| Accession | NZ_CP110198 | ||
| Organism | Salmonella enterica subsp. enterica serovar Typhimurium strain 1104-75 | ||
Toxin (Protein)
| Gene name | higB | Uniprot ID | B5F003 |
| Locus tag | OCK70_RS23325 | Protein ID | WP_000558166.1 |
| Coordinates | 4779931..4780242 (+) | Length | 104 a.a. |
Antitoxin (Protein)
| Gene name | higA | Uniprot ID | - |
| Locus tag | OCK70_RS23330 | Protein ID | WP_001259011.1 |
| Coordinates | 4780239..4780685 (+) | Length | 149 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OCK70_RS23295 (4775589) | 4775589..4776491 | + | 903 | WP_000331361.1 | formate dehydrogenase subunit beta | - |
| OCK70_RS23300 (4776488) | 4776488..4777123 | + | 636 | WP_000829025.1 | formate dehydrogenase cytochrome b556 subunit | - |
| OCK70_RS23305 (4777120) | 4777120..4778049 | + | 930 | WP_000027730.1 | formate dehydrogenase accessory protein FdhE | - |
| OCK70_RS23310 (4778096) | 4778096..4778386 | - | 291 | WP_000362050.1 | DNA-binding transcriptional regulator | - |
| OCK70_RS23315 (4778387) | 4778387..4778698 | - | 312 | WP_001159630.1 | cytotoxic translational repressor of toxin-antitoxin stability system | - |
| OCK70_RS23320 (4778916) | 4778916..4779845 | + | 930 | WP_001127703.1 | alpha/beta hydrolase | - |
| OCK70_RS23325 (4779931) | 4779931..4780242 | + | 312 | WP_000558166.1 | type II toxin-antitoxin system HigB family toxin | Toxin |
| OCK70_RS23330 (4780239) | 4780239..4780685 | + | 447 | WP_001259011.1 | type II toxin-antitoxin system HigA family antitoxin | Antitoxin |
| OCK70_RS23335 (4780700) | 4780700..4781641 | - | 942 | WP_001518251.1 | fatty acid biosynthesis protein FabY | - |
| OCK70_RS23340 (4781686) | 4781686..4782123 | - | 438 | WP_000560974.1 | D-aminoacyl-tRNA deacylase | - |
| OCK70_RS23345 (4782120) | 4782120..4782992 | - | 873 | WP_000921427.1 | virulence factor BrkB family protein | - |
| OCK70_RS23350 (4782986) | 4782986..4783585 | - | 600 | WP_000965695.1 | glucose-1-phosphatase | - |
| OCK70_RS23355 (4783776) | 4783776..4784579 | - | 804 | WP_000059693.1 | DeoR/GlpR family DNA-binding transcription regulator | - |
| OCK70_RS23360 (4784613) | 4784613..4785509 | - | 897 | WP_001520529.1 | sugar kinase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 a.a. Molecular weight: 12432.40 Da Isoelectric Point: 9.5334
>T263407 WP_000558166.1 NZ_CP110198:4779931-4780242 [Salmonella enterica subsp. enterica serovar Typhimurium]
VHVISRKPFNEAMLMYPNHELALTELLNVLEKKTFTQPEEMKRYIPSLDNFKYRDKWWVIDVSGNSLRLISYIDFRLHKI
FVKHIVSHAEYDKLTAYYRGNKE
VHVISRKPFNEAMLMYPNHELALTELLNVLEKKTFTQPEEMKRYIPSLDNFKYRDKWWVIDVSGNSLRLISYIDFRLHKI
FVKHIVSHAEYDKLTAYYRGNKE
Download Length: 312 bp
Antitoxin
Download Length: 149 a.a. Molecular weight: 16734.08 Da Isoelectric Point: 6.6451
>AT263407 WP_001259011.1 NZ_CP110198:4780239-4780685 [Salmonella enterica subsp. enterica serovar Typhimurium]
MRTHRQMDATSAKKIVDTFSDAVKTVPLMGEDRNDNEYRRALALVEFLVDHDDLENPLFELLCARISEYEKHAPEFKALN
QHLEKTPPGVSVLRTLMDQYGLKAADLANELGSKSNVSNILNGRRALTVNHIKALTQRFKLPADAFIE
MRTHRQMDATSAKKIVDTFSDAVKTVPLMGEDRNDNEYRRALALVEFLVDHDDLENPLFELLCARISEYEKHAPEFKALN
QHLEKTPPGVSVLRTLMDQYGLKAADLANELGSKSNVSNILNGRRALTVNHIKALTQRFKLPADAFIE
Download Length: 447 bp
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|