Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) higBA (relBE)/HTH(antitoxin)
Location 4778096..4778698 Replicon chromosome
Accession NZ_CP110198
Organism Salmonella enterica subsp. enterica serovar Typhimurium strain 1104-75

Toxin (Protein)


Gene name higB Uniprot ID C0Q3J8
Locus tag OCK70_RS23315 Protein ID WP_001159630.1
Coordinates 4778387..4778698 (-) Length 104 a.a.

Antitoxin (Protein)


Gene name higA Uniprot ID -
Locus tag OCK70_RS23310 Protein ID WP_000362050.1
Coordinates 4778096..4778386 (-) Length 97 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
OCK70_RS23295 (4775589) 4775589..4776491 + 903 WP_000331361.1 formate dehydrogenase subunit beta -
OCK70_RS23300 (4776488) 4776488..4777123 + 636 WP_000829025.1 formate dehydrogenase cytochrome b556 subunit -
OCK70_RS23305 (4777120) 4777120..4778049 + 930 WP_000027730.1 formate dehydrogenase accessory protein FdhE -
OCK70_RS23310 (4778096) 4778096..4778386 - 291 WP_000362050.1 DNA-binding transcriptional regulator Antitoxin
OCK70_RS23315 (4778387) 4778387..4778698 - 312 WP_001159630.1 cytotoxic translational repressor of toxin-antitoxin stability system Toxin
OCK70_RS23320 (4778916) 4778916..4779845 + 930 WP_001127703.1 alpha/beta hydrolase -
OCK70_RS23325 (4779931) 4779931..4780242 + 312 WP_000558166.1 type II toxin-antitoxin system HigB family toxin -
OCK70_RS23330 (4780239) 4780239..4780685 + 447 WP_001259011.1 type II toxin-antitoxin system HigA family antitoxin -
OCK70_RS23335 (4780700) 4780700..4781641 - 942 WP_001518251.1 fatty acid biosynthesis protein FabY -
OCK70_RS23340 (4781686) 4781686..4782123 - 438 WP_000560974.1 D-aminoacyl-tRNA deacylase -
OCK70_RS23345 (4782120) 4782120..4782992 - 873 WP_000921427.1 virulence factor BrkB family protein -
OCK70_RS23350 (4782986) 4782986..4783585 - 600 WP_000965695.1 glucose-1-phosphatase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin


No domain identified.


Antitoxin

Cro/C1-type helix-turn-helix domain

(36-85)


Sequences

Toxin        


Download         Length: 104 a.a.        Molecular weight: 12326.27 Da        Isoelectric Point: 9.4460

>T263406 WP_001159630.1 NZ_CP110198:c4778698-4778387 [Salmonella enterica subsp. enterica serovar Typhimurium]
MQFIETELFTEDVKKLLDDDEYHKLQVFMAQHPDCGDVIQETGGLRKMRWGARGKGKRSGVRIIYFHRSQRYEIRLLLIY
QKGIKDDLTPQEKAVLRMLNERW

Download         Length: 312 bp

Antitoxin


Download         Length: 97 a.a.        Molecular weight: 10971.59 Da        Isoelectric Point: 10.6525

>AT263406 WP_000362050.1 NZ_CP110198:c4778386-4778096 [Salmonella enterica subsp. enterica serovar Typhimurium]
MDKVLFERLTQSMSQMNEIIEGTREPSRTFHIDAMKIKEIRQASGLSQSKFAELISVNVDTLRNWEQGRRSPTGPAKALL
RAIANDPRNVIQALRY

Download         Length: 291 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0R9NS64

Antitoxin

Source ID Structure

References