Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | higBA (relBE)/COG4683-HTH_37 |
Location | 4694..5345 | Replicon | plasmid unnamed1 |
Accession | NZ_CP107586 | ||
Organism | Acinetobacter baumannii strain 1326527-1 |
Toxin (Protein)
Gene name | higB | Uniprot ID | V2UF49 |
Locus tag | OIO72_RS19135 | Protein ID | WP_000269909.1 |
Coordinates | 4989..5345 (-) | Length | 119 a.a. |
Antitoxin (Protein)
Gene name | higA | Uniprot ID | - |
Locus tag | OIO72_RS19130 | Protein ID | WP_001140621.1 |
Coordinates | 4694..4996 (-) | Length | 101 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
OIO72_RS19105 (OIO72_19110) | 273..560 | + | 288 | WP_000438827.1 | BrnT family toxin | - |
OIO72_RS19110 (OIO72_19115) | 547..861 | + | 315 | WP_001983304.1 | BrnA antitoxin family protein | - |
OIO72_RS19115 (OIO72_19120) | 989..3400 | + | 2412 | WP_000932942.1 | TonB-dependent receptor ZnuD2 | - |
OIO72_RS19120 (OIO72_19125) | 3705..4166 | + | 462 | WP_000761346.1 | DIP1984 family protein | - |
OIO72_RS19125 (OIO72_19130) | 4492..4701 | - | 210 | WP_000069474.1 | hypothetical protein | - |
OIO72_RS19130 (OIO72_19135) | 4694..4996 | - | 303 | WP_001140621.1 | XRE family transcriptional regulator | Antitoxin |
OIO72_RS19135 (OIO72_19140) | 4989..5345 | - | 357 | WP_000269909.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
OIO72_RS19140 (OIO72_19145) | 6151..6984 | - | 834 | WP_000439570.1 | S-formylglutathione hydrolase | - |
OIO72_RS19145 (OIO72_19150) | 7458..7856 | - | 399 | WP_000235176.1 | VOC family protein | - |
OIO72_RS19150 (OIO72_19155) | 7909..9018 | - | 1110 | WP_000842148.1 | S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | - |
OIO72_RS19155 (OIO72_19160) | 9040..9315 | - | 276 | WP_001133626.1 | metal/formaldehyde-sensitive transcriptional repressor | - |
OIO72_RS19160 (OIO72_19165) | 9901..10047 | + | 147 | WP_001983317.1 | hypothetical protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Non-Mobilizable plasmid | - | - | 1..19667 | 19667 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 119 a.a. Molecular weight: 13515.49 Da Isoelectric Point: 6.4631
>T261770 WP_000269909.1 NZ_CP107586:c5345-4989 [Acinetobacter baumannii]
MWTVITTDLFNEWLVQQDESTQEKVLAALVVLQQQGPSLGRPLVDTVYDSKFTNMKELRVQHRGKPLRAFFAFDPLRQAI
VLCIGDKGGKKRFYKEMLDIADQQYELHLSTLGDQSNG
MWTVITTDLFNEWLVQQDESTQEKVLAALVVLQQQGPSLGRPLVDTVYDSKFTNMKELRVQHRGKPLRAFFAFDPLRQAI
VLCIGDKGGKKRFYKEMLDIADQQYELHLSTLGDQSNG
Download Length: 357 bp
Antitoxin
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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