Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) phd-doc/Doc-RelB
Location 2387698..2388284 Replicon chromosome
Accession NZ_CP107363
Organism Klebsiella pneumoniae strain CRKP_33

Toxin (Protein)


Gene name doc Uniprot ID W8VD46
Locus tag OH511_RS11925 Protein ID WP_002920800.1
Coordinates 2387698..2388066 (-) Length 123 a.a.

Antitoxin (Protein)


Gene name phd Uniprot ID A0A0H3GZM4
Locus tag OH511_RS11930 Protein ID WP_002920802.1
Coordinates 2388063..2388284 (-) Length 74 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
OH511_RS11905 2383201..2384271 - 1071 WP_002920787.1 sn-glycerol-3-phosphate import ATP-binding protein UgpC -
OH511_RS11910 2384273..2385118 - 846 WP_002920789.1 sn-glycerol-3-phosphate ABC transporter permease UgpE -
OH511_RS11915 2385115..2386002 - 888 WP_002920792.1 sn-glycerol-3-phosphate ABC transporter permease UgpA -
OH511_RS11920 2386109..2387425 - 1317 WP_002920796.1 sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB -
OH511_RS11925 2387698..2388066 - 369 WP_002920800.1 type II toxin-antitoxin system death-on-curing family toxin Toxin
OH511_RS11930 2388063..2388284 - 222 WP_002920802.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
OH511_RS11935 2388448..2389161 - 714 WP_004145133.1 high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF -
OH511_RS11940 2389163..2389930 - 768 WP_002920803.1 high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG -
OH511_RS11945 2389927..2391204 - 1278 WP_002920806.1 branched chain amino acid ABC transporter permease LivM -
OH511_RS11950 2391201..2392127 - 927 WP_002920807.1 high-affinity branched-chain amino acid ABC transporter permease LivH -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
inside Prophage - - 2382464..2403052 20588


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Fido domain

(13-86)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-49)


Sequences

Toxin        


Download         Length: 123 a.a.        Molecular weight: 13552.92 Da        Isoelectric Point: 8.6410

>T260925 WP_002920800.1 NZ_CP107363:c2388066-2387698 [Klebsiella pneumoniae]
MTLQIISAEEIIQFHDRLLRVTPGVAGMPDPGRAEAIMYRVLNKIEYEGVTDVWRLAAMHLLAISRGHIFNDGNKRTALF
ITLLFLKRNGIILPANPDFVGMTVEAAAGQLTLEQIVARLRG

Download         Length: 369 bp

Antitoxin


Download         Length: 74 a.a.        Molecular weight: 8181.18 Da        Isoelectric Point: 4.7769

>AT260925 WP_002920802.1 NZ_CP107363:c2388284-2388063 [Klebsiella pneumoniae]
MRTVNYSEARQNLADVLESAVTGVPVTITRRGHKSAVIISAEEFERYQTARMDDEFAAIMAVHGDEIRELADK

Download         Length: 222 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0H3GUD1

Antitoxin

Source ID Structure
AlphaFold DB A0A0H3GZM4

References