Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | yefM-yoeB (relBE)/YoeB-YefM |
Location | 2987856..2988358 | Replicon | chromosome |
Accession | NZ_CP106756 | ||
Organism | Escherichia coli strain B-JRPT-4119 |
Toxin (Protein)
Gene name | yoeB | Uniprot ID | U9YDH0 |
Locus tag | N8153_RS14735 | Protein ID | WP_000767829.1 |
Coordinates | 2987856..2988110 (-) | Length | 85 a.a. |
Antitoxin (Protein)
Gene name | yefM | Uniprot ID | - |
Locus tag | N8153_RS14740 | Protein ID | WP_263082258.1 |
Coordinates | 2988107..2988358 (-) | Length | 84 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
N8153_RS14705 (2982871) | 2982871..2983098 | - | 228 | WP_000985278.1 | thiosulfate utilization sulfurtransferase TsuB/YeeD | - |
N8153_RS14710 (2983112) | 2983112..2984170 | - | 1059 | WP_000492312.1 | thiosulfate utilization transporter TsuA/YeeE | - |
N8153_RS14715 (2984349) | 2984349..2985707 | - | 1359 | WP_000019197.1 | putrescine/proton symporter PlaP | - |
N8153_RS14720 (2985697) | 2985697..2985759 | - | 63 | WP_010723108.1 | membrane protein YoeI | - |
N8153_RS14725 (2985974) | 2985974..2986903 | - | 930 | WP_000803374.1 | LysR substrate-binding domain-containing protein | - |
N8153_RS14730 (2986949) | 2986949..2987773 | - | 825 | WP_000754737.1 | SDR family oxidoreductase | - |
N8153_RS14735 (2987856) | 2987856..2988110 | - | 255 | WP_000767829.1 | type II toxin-antitoxin system mRNA interferase toxin YoeB | Toxin |
N8153_RS14740 (2988107) | 2988107..2988358 | - | 252 | WP_263082258.1 | YoeB-YefM toxin-antitoxin system antitoxin YefM | Antitoxin |
N8153_RS14745 (2988641) | 2988641..2988691 | + | 51 | WP_001364200.1 | his operon leader peptide | - |
N8153_RS14750 (2988837) | 2988837..2989736 | + | 900 | WP_000131782.1 | ATP phosphoribosyltransferase | - |
N8153_RS14755 (2989742) | 2989742..2991046 | + | 1305 | WP_001300981.1 | histidinol dehydrogenase | - |
N8153_RS14760 (2991043) | 2991043..2992113 | + | 1071 | WP_000108985.1 | histidinol-phosphate transaminase | - |
N8153_RS14765 (2992113) | 2992113..2993180 | + | 1068 | WP_000080118.1 | bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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