Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | higBA (relBE)/HigB-HigA |
Location | 5806737..5807278 | Replicon | chromosome |
Accession | NZ_CP104866 | ||
Organism | Pseudomonas aeruginosa strain PALA4 |
Toxin (Protein)
Gene name | higB | Uniprot ID | - |
Locus tag | PALA4_RS27050 | Protein ID | WP_003111576.1 |
Coordinates | 5807009..5807278 (-) | Length | 90 a.a. |
Antitoxin (Protein)
Gene name | higA | Uniprot ID | - |
Locus tag | PALA4_RS27045 | Protein ID | WP_269973773.1 |
Coordinates | 5806737..5806997 (-) | Length | 87 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
PALA4_RS27020 (PALA4_05339) | 5801878..5802150 | - | 273 | WP_003115921.1 | hypothetical protein | - |
PALA4_RS27025 | 5802738..5802932 | + | 195 | WP_003111573.1 | hypothetical protein | - |
PALA4_RS27030 (PALA4_05340) | 5803052..5804485 | - | 1434 | WP_020750803.1 | hypothetical protein | - |
PALA4_RS27035 | 5804748..5805131 | - | 384 | WP_003111574.1 | hypothetical protein | - |
PALA4_RS27045 (PALA4_05342) | 5806737..5806997 | - | 261 | WP_269973773.1 | HigA family addiction module antitoxin | Antitoxin |
PALA4_RS27050 | 5807009..5807278 | - | 270 | WP_003111576.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
PALA4_RS27055 | 5807331..5807459 | - | 129 | Protein_5347 | integrase | - |
PALA4_RS27060 (PALA4_05343) | 5807607..5809835 | + | 2229 | WP_023443586.1 | TonB-dependent receptor | - |
PALA4_RS27065 (PALA4_05344) | 5809906..5810553 | - | 648 | WP_003095021.1 | carbonate dehydratase | - |
PALA4_RS27070 (PALA4_05345) | 5810615..5811853 | - | 1239 | WP_003111578.1 | C69 family dipeptidase | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | flank | IS/Tn | - | - | 5806398..5806676 | 278 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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