Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) higBA (relBE)/HigB-HTH_XRE
Location 1485048..1485727 Replicon chromosome
Accession NZ_CP104846
Organism Escherichia coli strain DFS.1

Toxin (Protein)


Gene name higB Uniprot ID S1PK60
Locus tag N7219_RS07255 Protein ID WP_000057523.1
Coordinates 1485048..1485350 (+) Length 101 a.a.

Antitoxin (Protein)


Gene name higA Uniprot ID S1QAY3
Locus tag N7219_RS07260 Protein ID WP_000806442.1
Coordinates 1485386..1485727 (+) Length 114 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
N7219_RS07230 (1480424) 1480424..1482076 + 1653 WP_000771748.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -
N7219_RS07235 (1482114) 1482114..1482617 - 504 WP_000667000.1 hypothetical protein -
N7219_RS07240 (1482614) 1482614..1483414 - 801 WP_000439798.1 hypothetical protein -
N7219_RS07245 (1483438) 1483438..1483917 - 480 WP_000186633.1 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK -
N7219_RS07250 (1484121) 1484121..1484915 - 795 WP_000365147.1 TraB/GumN family protein -
N7219_RS07255 (1485048) 1485048..1485350 + 303 WP_000057523.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
N7219_RS07260 (1485386) 1485386..1485727 + 342 WP_000806442.1 HigA family addiction module antitoxin Antitoxin
N7219_RS07265 (1485785) 1485785..1488289 - 2505 WP_000083947.1 copper-exporting P-type ATPase CopA -
N7219_RS07270 (1488551) 1488551..1489483 + 933 WP_000883041.1 glutaminase A -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin HigB-1

(9-98)

Antitoxin

Toxin-antitoxin system, antidote protein, HigA

(1-100)


Sequences

Toxin        


Download         Length: 101 a.a.        Molecular weight: 11809.44 Da        Isoelectric Point: 10.3980

>T259262 WP_000057523.1 NZ_CP104846:1485048-1485350 [Escherichia coli]
MAQKKNIRSFRDAWLADFFVHSTPHRKIPAEIHTTLSRKLDIINAATSHRDLRSPPGNRYEELSGKLQEYSSIRVNKQYR
LIFKWVNGKAEELFLDPHNY

Download         Length: 303 bp

Antitoxin


Download         Length: 114 a.a.        Molecular weight: 13171.10 Da        Isoelectric Point: 5.7790

>AT259262 WP_000806442.1 NZ_CP104846:1485386-1485727 [Escherichia coli]
MKQATRKPTTPGDILLYEYLEPLDLKINELAELLHVHRNSVSALINNNRKLTTEMAFRLAKVFDTTVDFWLNLQAAVDLW
EVENNMRTQEELGRIETVAEYLARREERAKKVA

Download         Length: 342 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB S1PK60

Antitoxin

Source ID Structure
PDB 2EBY
AlphaFold DB S1QAY3

References