Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | prlF-yhaV (relBE)/YhaV-PrlF |
Location | 900166..900983 | Replicon | chromosome |
Accession | NZ_CP104581 | ||
Organism | Delftia tsuruhatensis strain GD03927 |
Toxin (Protein)
Gene name | yhaV | Uniprot ID | A0A072THA9 |
Locus tag | N5O86_RS04045 | Protein ID | WP_043790975.1 |
Coordinates | 900166..900657 (-) | Length | 164 a.a. |
Antitoxin (Protein)
Gene name | prlF | Uniprot ID | - |
Locus tag | N5O86_RS04050 | Protein ID | WP_016448384.1 |
Coordinates | 900654..900983 (-) | Length | 110 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
N5O86_RS04015 (N5O86_04015) | 895304..895789 | + | 486 | WP_026062693.1 | cobalamin biosynthesis protein | - |
N5O86_RS04020 (N5O86_04020) | 895786..896664 | + | 879 | WP_279494183.1 | precorrin-4 C(11)-methyltransferase | - |
N5O86_RS04025 (N5O86_04025) | 896661..897458 | + | 798 | WP_279494184.1 | precorrin-6A synthase (deacetylating) | - |
N5O86_RS04030 (N5O86_04030) | 897522..897851 | + | 330 | WP_013800515.1 | DHCW motif cupin fold protein | - |
N5O86_RS04035 (N5O86_04035) | 898127..899524 | + | 1398 | WP_017406579.1 | chloride channel protein | - |
N5O86_RS04040 (N5O86_04040) | 899639..900151 | + | 513 | WP_016448386.1 | MgtC/SapB family protein | - |
N5O86_RS04045 (N5O86_04045) | 900166..900657 | - | 492 | WP_043790975.1 | type II toxin-antitoxin system YhaV family toxin | Toxin |
N5O86_RS04050 (N5O86_04050) | 900654..900983 | - | 330 | WP_016448384.1 | type II toxin-antitoxin system PrlF family antitoxin | Antitoxin |
N5O86_RS04055 (N5O86_04055) | 901081..903324 | - | 2244 | WP_279494187.1 | TonB-dependent receptor | - |
N5O86_RS04060 (N5O86_04060) | 903435..903839 | - | 405 | WP_046988681.1 | hypothetical protein | - |
N5O86_RS04065 (N5O86_04065) | 903868..904530 | - | 663 | WP_046988682.1 | pyridoxamine 5'-phosphate oxidase family protein | - |
N5O86_RS04070 (N5O86_04070) | 904601..905431 | + | 831 | WP_141835639.1 | helix-turn-helix transcriptional regulator | - |
N5O86_RS04075 (N5O86_04075) | 905521..905790 | + | 270 | WP_012207631.1 | type II toxin-antitoxin system ParD family antitoxin | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 164 a.a. Molecular weight: 18801.33 Da Isoelectric Point: 9.9304
>T258463 WP_043790975.1 NZ_CP104581:c900657-900166 [Delftia tsuruhatensis]
MSAVPPAPLRIHGWTVFMHPLFLAQLQALSHEVEGLKTKDPGGYTRKNATKRLAAIRKLAFDVIPQDPTRPDYRQGHTLG
EEHKHWFRARFFQQYRLFFRFHAPSKIIVFAWVNDEDTRRAYEGSDDAYRVFRKMLANGHPPGDWDSLLAQAESPPPDSQ
PHA
MSAVPPAPLRIHGWTVFMHPLFLAQLQALSHEVEGLKTKDPGGYTRKNATKRLAAIRKLAFDVIPQDPTRPDYRQGHTLG
EEHKHWFRARFFQQYRLFFRFHAPSKIIVFAWVNDEDTRRAYEGSDDAYRVFRKMLANGHPPGDWDSLLAQAESPPPDSQ
PHA
Download Length: 492 bp
Antitoxin
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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