Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) prlF-yhaV (relBE)/YhaV-PrlF
Location 600164..600963 Replicon chromosome
Accession NZ_CP103672
Organism Escherichia coli O25b:H4-ST131 strain 4433

Toxin (Protein)


Gene name yhaV Uniprot ID S1NYM6
Locus tag M5S92_RS02950 Protein ID WP_000347251.1
Coordinates 600164..600628 (-) Length 155 a.a.

Antitoxin (Protein)


Gene name prlF Uniprot ID S1PPV5
Locus tag M5S92_RS02955 Protein ID WP_001296435.1
Coordinates 600628..600963 (-) Length 112 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
M5S92_RS02920 (595165) 595165..595599 - 435 WP_000948824.1 PTS galactosamine/N-acetylgalactosamine transporter subunit IIA -
M5S92_RS02925 (595617) 595617..596495 - 879 WP_001295548.1 PTS N-acetylgalactosamine transporter subunit IID -
M5S92_RS02930 (596485) 596485..597264 - 780 WP_000406214.1 PTS N-acetylgalactosamine transporter subunit IIC -
M5S92_RS02935 (597275) 597275..597748 - 474 WP_001295547.1 PTS N-acetylgalactosamine transporter subunit IIB -
M5S92_RS02940 (597771) 597771..599051 - 1281 WP_000681950.1 tagatose-bisphosphate aldolase subunit KbaZ -
M5S92_RS02945 (599300) 599300..600109 + 810 WP_000072187.1 aga operon transcriptional regulator AgaR -
M5S92_RS02950 (600164) 600164..600628 - 465 WP_000347251.1 type II toxin-antitoxin system ribonuclease toxin YhaV Toxin
M5S92_RS02955 (600628) 600628..600963 - 336 WP_001296435.1 type II toxin-antitoxin system antitoxin PrlF Antitoxin
M5S92_RS02960 (601112) 601112..602683 - 1572 WP_001273763.1 galactarate dehydratase -
M5S92_RS02965 (603058) 603058..604392 + 1335 WP_000599651.1 galactarate/glucarate/glycerate transporter GarP -
M5S92_RS02970 (604408) 604408..605178 + 771 WP_001058227.1 2-dehydro-3-deoxyglucarate aldolase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin endonuclease, YhaV

(12-150)

Antitoxin

PrlF antitoxin

(14-110)


Sequences

Toxin        


Download         Length: 155 a.a.        Molecular weight: 17777.14 Da        Isoelectric Point: 9.4947

>T256071 WP_000347251.1 NZ_CP103672:c600628-600164 [Escherichia coli O25b:H4-ST131]
MDFPQRVNGWALYAHPCFQETYDALVAEVEALKGKDPENYQRKAATKLLAVVHKVIEEHITVNPSSPAFRHGKSLGSGKN
KDWSRVKFGAGRYRLFFRYSEKEKVIILGWMNDENTLRTYGKKTDAYTVFSKMLKRGHPPADWESLTQETEENH

Download         Length: 465 bp

Antitoxin


Download         Length: 112 a.a.        Molecular weight: 12321.92 Da        Isoelectric Point: 4.5392

>AT256071 WP_001296435.1 NZ_CP103672:c600963-600628 [Escherichia coli O25b:H4-ST131]
MPANARSNAVLTTESKVTIRGQTTIPAPVREALKLKPGLDSIHYEILPGGQVFMCRLGDEQEDHTMNAFLRFLDADIQNN
PQKTRPFDIQQGKKLVAGMDVNIDDEIGDDE

Download         Length: 336 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A829CJ20

Antitoxin

Source ID Structure
AlphaFold DB S1PPV5

References