Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) prlF-yhaV (relBE)/YhaV-PrlF
Location 589588..590387 Replicon chromosome
Accession NZ_CP103623
Organism Escherichia coli strain 3985

Toxin (Protein)


Gene name yhaV Uniprot ID F4VJD3
Locus tag M5T36_RS02890 Protein ID WP_000347266.1
Coordinates 589588..590052 (-) Length 155 a.a.

Antitoxin (Protein)


Gene name prlF Uniprot ID S1EB98
Locus tag M5T36_RS02895 Protein ID WP_001307405.1
Coordinates 590052..590387 (-) Length 112 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
M5T36_RS02860 (584589) 584589..585023 - 435 WP_000948824.1 PTS galactosamine/N-acetylgalactosamine transporter subunit IIA -
M5T36_RS02865 (585041) 585041..585919 - 879 WP_001298758.1 PTS N-acetylgalactosamine transporter subunit IID -
M5T36_RS02870 (585909) 585909..586688 - 780 WP_000406214.1 PTS N-acetylgalactosamine transporter subunit IIC -
M5T36_RS02875 (586699) 586699..587172 - 474 WP_001295547.1 PTS N-acetylgalactosamine transporter subunit IIB -
M5T36_RS02880 (587195) 587195..588475 - 1281 WP_000681921.1 tagatose-bisphosphate aldolase subunit KbaZ -
M5T36_RS02885 (588724) 588724..589533 + 810 WP_000072187.1 aga operon transcriptional regulator AgaR -
M5T36_RS02890 (589588) 589588..590052 - 465 WP_000347266.1 type II toxin-antitoxin system ribonuclease toxin YhaV Toxin
M5T36_RS02895 (590052) 590052..590387 - 336 WP_001307405.1 type II toxin-antitoxin system antitoxin PrlF Antitoxin
M5T36_RS02900 (590536) 590536..592107 - 1572 WP_001273741.1 galactarate dehydratase -
M5T36_RS02905 (592482) 592482..593816 + 1335 WP_000599640.1 galactarate/glucarate/glycerate transporter GarP -
M5T36_RS02910 (593832) 593832..594602 + 771 WP_001058227.1 2-dehydro-3-deoxyglucarate aldolase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Genomic island - - 589588..601821 12233


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin endonuclease, YhaV

(12-150)

Antitoxin

PrlF antitoxin

(14-110)


Sequences

Toxin        


Download         Length: 155 a.a.        Molecular weight: 17841.18 Da        Isoelectric Point: 9.4947

>T255872 WP_000347266.1 NZ_CP103623:c590052-589588 [Escherichia coli]
MDFPQRVNGWALYAHPCFQETYDALVAEVETLKGKDPENYQRKAATKLLAVVHKVIEEHITVNPSSPAFRHGKSLGSGKN
KDWSRVKFGAGRYRFFFRYSEKEKVIILGWMNDENTLRTYGKKTDAYTVFSKMLKRGHPPADWESLTQETEENH

Download         Length: 465 bp

Antitoxin


Download         Length: 112 a.a.        Molecular weight: 12358.94 Da        Isoelectric Point: 4.8616

>AT255872 WP_001307405.1 NZ_CP103623:c590387-590052 [Escherichia coli]
MPANARSHAVLTTESKVTIRGQTTIPAPVREALKLKPGQDSIHYEILPGGQVFMCRLGDEQEDHTMNAFLRFLDADIQNN
PQKTRPFNIQQGKKLVAGMDVNIDDEIGDDE

Download         Length: 336 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A836NGD2

Antitoxin

Source ID Structure
AlphaFold DB A0A0E0XVC7

References