Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) higBA (relBE)/RelE-HTH
Location 3788167..3788771 Replicon chromosome
Accession NC_015856
Organism Collimonas fungivorans Ter331

Toxin (Protein)


Gene name higB Uniprot ID -
Locus tag CFU_RS16720 Protein ID WP_041743607.1
Coordinates 3788460..3788771 (-) Length 104 a.a.

Antitoxin (Protein)


Gene name higA Uniprot ID -
Locus tag CFU_RS16715 Protein ID WP_014007215.1
Coordinates 3788167..3788457 (-) Length 97 a.a.

Genomic Context

CFU_RS16690CFU_RS16700CFU_RS16705CFU_RS16730CFU_RS16735CFU_RS16740CFU_RS16745CFU_RS16695CFU_RS16710CFU_RS16715CFU_RS16720CFU_RS16725
Location: 3783857..3784171 (315 bp)
Type: Others
Protein ID: WP_014007210.1
Location: 3785507..3785992 (486 bp)
Type: Others
Protein ID: WP_014007212.1
Location: 3786096..3786731 (636 bp)
Type: Others
Protein ID: WP_041742233.1
Location: 3790545..3791108 (564 bp)
Type: Others
Protein ID: WP_014007218.1
Location: 3791105..3791848 (744 bp)
Type: Others
Protein ID: WP_014007219.1
Location: 3791859..3792521 (663 bp)
Type: Others
Protein ID: WP_041742235.1
Location: 3792534..3793217 (684 bp)
Type: Others
Protein ID: WP_041742236.1
Location: 3784325..3785356 (1032 bp)
Type: Others
Protein ID: WP_014007211.1
Location: 3786786..3787853 (1068 bp)
Type: Others
Protein ID: WP_041742234.1
Location: 3788167..3788457 (291 bp)
Type: Antitoxin
Protein ID: WP_014007215.1
Location: 3788460..3788771 (312 bp)
Type: Toxin
Protein ID: WP_041743607.1
Location: 3789017..3790222 (1206 bp)
Type: Others
Protein ID: WP_014007217.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
CFU_RS166903783857..3784171+315WP_014007210.1pyrimidine/purine nucleoside phosphorylase-
CFU_RS166953784325..3785356-1032WP_014007211.1UDP-N-acetylmuramate dehydrogenase-
CFU_RS167003785507..3785992+486WP_014007212.1YajQ family cyclic di-GMP-binding protein-
CFU_RS167053786096..3786731+636WP_041742233.1TIGR02281 family clan AA aspartic protease-
CFU_RS167103786786..3787853-1068WP_041742234.13-deoxy-7-phosphoheptulonate synthase AroG-
CFU_RS167153788167..3788457-291WP_014007215.1helix-turn-helix domain-containing proteinAntitoxin
CFU_RS167203788460..3788771-312WP_041743607.1type II toxin-antitoxin system RelE/ParE family toxinToxin
CFU_RS167253789017..3790222-1206WP_014007217.1MFS transporter-
CFU_RS167303790545..3791108+564WP_014007218.1methylated-DNA--[protein]-cysteine S-methyltransferase-
CFU_RS167353791105..3791848+744WP_014007219.12OG-Fe(II) oxygenase-
CFU_RS167403791859..3792521+663WP_041742235.1DNA oxidative demethylase AlkB-
CFU_RS167453792534..3793217+684WP_041742236.1DNA-3-methyladenine glycosylase-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin HigB-2

(42-102)

Antitoxin

Cro/C1-type helix-turn-helix domain

(37-75)


Sequences

Toxin        


Download         Length: 104 a.a.        Molecular weight: 11962.88 Da        Isoelectric Point: 9.2617

>T25570 WP_041743607.1 NC_015856:c3788771-3788460 [Collimonas fungivorans Ter331]
MEFIETPTFTRMITALLAEEEYRELQSVLMEDPSRGDVIKDGGGIRKMRYAARGRGKSGGIRVIYYWIKDNHQVYMLVAY
PKSKKDTLSDKEIAILREFVKEL

Download         Length: 312 bp

>T25570 NC_015856:c3788771-3788460 [Collimonas fungivorans Ter331]
ATGGAATTCATCGAGACGCCCACTTTTACTCGGATGATCACAGCCTTGCTTGCAGAGGAAGAATACCGGGAACTGCAATC
GGTATTGATGGAGGATCCGTCCCGGGGCGATGTCATCAAAGATGGCGGCGGCATCCGCAAAATGCGGTACGCAGCGCGAG
GTCGTGGCAAAAGCGGCGGAATCAGAGTGATCTATTATTGGATAAAGGATAACCACCAGGTTTACATGCTAGTGGCCTAT
CCGAAATCCAAAAAAGATACGCTATCCGATAAGGAAATTGCTATTTTGCGGGAATTTGTGAAGGAACTGTAA

Antitoxin


Download         Length: 97 a.a.        Molecular weight: 10647.27 Da        Isoelectric Point: 10.3121

>AT25570 WP_014007215.1 NC_015856:c3788457-3788167 [Collimonas fungivorans Ter331]
MENVLFDDLLQSLKEAKAISEGKAEASRRFQMSPTDVKAVREQIGLSQSEFAKLMRVSIKTLQNWEQHRRSPTGPAAALL
KIVSTAPDIALKSLHS

Download         Length: 291 bp

>AT25570 NC_015856:c3788457-3788167 [Collimonas fungivorans Ter331]
ATGGAAAATGTACTTTTTGATGACCTGCTGCAAAGTCTGAAAGAAGCAAAGGCTATTTCCGAAGGGAAAGCCGAGGCATC
GCGCCGATTTCAGATGTCGCCTACCGATGTAAAAGCCGTTCGTGAGCAAATTGGCTTATCTCAGAGCGAATTTGCAAAAC
TGATGCGTGTCAGCATCAAGACTTTGCAAAACTGGGAGCAGCACCGGCGCAGTCCGACTGGCCCAGCCGCCGCCTTGCTC
AAAATTGTATCAACGGCGCCAGATATAGCGCTTAAGTCATTGCATAGTTGA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References