Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) prlF-yhaV (relBE)/YhaV-PrlF
Location 18874..19715 Replicon chromosome
Accession NC_015856
Organism Collimonas fungivorans Ter331

Toxin (Protein)


Gene name yhaV Uniprot ID G0A7T7
Locus tag CFU_RS00050 Protein ID WP_014004003.1
Coordinates 18874..19389 (-) Length 172 a.a.

Antitoxin (Protein)


Gene name prlF Uniprot ID -
Locus tag CFU_RS00055 Protein ID WP_041740976.1
Coordinates 19386..19715 (-) Length 110 a.a.

Genomic Context

CFU_RS24245CFU_RS00040CFU_RS00045CFU_RS23565CFU_RS00065CFU_RS23560CFU_RS00050CFU_RS00055CFU_RS00060CFU_RS00070CFU_RS00075
Location: 14533..15315 (783 bp)
Type: Others
Protein ID: WP_148264715.1
Location: 15296..15883 (588 bp)
Type: Others
Protein ID: WP_190275202.1
Location: 16490..17983 (1494 bp)
Type: Others
Protein ID: WP_014004002.1
Location: 18612..18854 (243 bp)
Type: Others
Protein ID: WP_190275203.1
Location: 21228..21971 (744 bp)
Type: Others
Protein ID: WP_041740978.1
Location: 18188..18400 (213 bp)
Type: Others
Protein ID: WP_081466375.1
Location: 18874..19389 (516 bp)
Type: Toxin
Protein ID: WP_014004003.1
Location: 19386..19715 (330 bp)
Type: Antitoxin
Protein ID: WP_041740976.1
Location: 20194..21126 (933 bp)
Type: Others
Protein ID: WP_014004005.1
Location: 22204..23436 (1233 bp)
Type: Others
Protein ID: WP_041740979.1
Location: 23976..24575 (600 bp)
Type: Others
Protein ID: WP_014004008.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
CFU_RS2424514533..15315+783WP_148264715.1hypothetical protein-
CFU_RS0004015296..15883+588WP_190275202.1hypothetical protein-
CFU_RS0004516490..17983+1494WP_014004002.1RNA-directed DNA polymerase-
CFU_RS2356018188..18400-213WP_081466375.1helix-turn-helix domain-containing protein-
CFU_RS2356518612..18854+243WP_190275203.1SymE family type I addiction module toxin-
CFU_RS0005018874..19389-516WP_014004003.1type II toxin-antitoxin system YhaV family toxinToxin
CFU_RS0005519386..19715-330WP_041740976.1type II toxin-antitoxin system PrlF family antitoxinAntitoxin
CFU_RS0006020194..21126-933WP_014004005.1AraC family transcriptional regulator-
CFU_RS0006521228..21971+744WP_041740978.1SDR family oxidoreductase-
CFU_RS0007022204..23436-1233WP_041740979.1Fic family protein-
CFU_RS0007523976..24575-600WP_014004008.1hypothetical protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin endonuclease, YhaV

(16-152)

Antitoxin

PrlF antitoxin

(8-107)


Sequences

Toxin        


Download         Length: 172 a.a.        Molecular weight: 19843.54 Da        Isoelectric Point: 9.2094

>T25566 WP_014004003.1 NC_015856:c19389-18874 [Collimonas fungivorans Ter331]
MTGSKPAHLVVNGWTVFAHPLFLAQIETLMRQVEALKQKDPAEYTKKNPRRRLAAIAELAFEVIPQDPSRAEYRQGNTLG
EDHKHWFRAKFFQQYRLFFRYHAPSKVIVYAWVNDGGTMRAYESSDDAYRVFRKMLESGHPPDDWDQLLVEARSEGDRLQ
RIAAAEPLVQP

Download         Length: 516 bp

>T25566 NC_015856:c19389-18874 [Collimonas fungivorans Ter331]
ATGACCGGCAGCAAACCTGCGCACCTGGTCGTCAACGGGTGGACAGTTTTCGCTCACCCGCTATTCCTTGCGCAAATTGA
AACGCTGATGCGGCAGGTCGAGGCACTCAAGCAAAAAGATCCCGCCGAATACACAAAAAAGAACCCCAGGAGGCGGCTGG
CAGCAATCGCCGAACTGGCGTTCGAGGTGATTCCGCAAGATCCGTCGCGGGCCGAATACCGGCAGGGAAACACCCTCGGC
GAAGACCACAAGCACTGGTTCCGAGCCAAGTTCTTCCAGCAGTACCGGCTGTTCTTCCGCTACCATGCACCAAGCAAAGT
GATCGTCTACGCGTGGGTGAACGACGGGGGCACCATGCGCGCCTATGAGAGCAGCGACGATGCCTACCGGGTGTTCCGCA
AGATGCTGGAGAGCGGCCATCCTCCGGACGACTGGGATCAACTATTGGTCGAGGCGCGTTCCGAAGGCGACCGTCTGCAG
CGTATCGCGGCAGCGGAACCACTGGTGCAGCCCTGA

Antitoxin


Download         Length: 110 a.a.        Molecular weight: 12062.54 Da        Isoelectric Point: 4.3953

>AT25566 WP_041740976.1 NC_015856:c19715-19386 [Collimonas fungivorans Ter331]
MTASLEVESTLTDRYQTTVPETVRRALKLSKRDKIHYTIRPGGEVVLSRVEAAEEEDPVLGQFLGFLARDIASHPERLQA
VDANFVQRIQSLVGGVEVDLDTALPADDE

Download         Length: 330 bp

>AT25566 NC_015856:c19715-19386 [Collimonas fungivorans Ter331]
ATGACTGCCTCCCTAGAAGTCGAATCGACCCTGACCGATCGCTACCAGACAACGGTGCCGGAAACCGTTCGCCGCGCCCT
GAAGCTGAGCAAGCGGGACAAGATTCACTACACGATCCGCCCCGGCGGTGAGGTCGTACTCTCCCGCGTGGAAGCGGCCG
AGGAAGAGGACCCGGTGCTCGGGCAGTTCCTGGGCTTTCTGGCCCGCGACATTGCCAGCCATCCGGAACGACTCCAAGCC
GTCGACGCCAATTTCGTGCAACGCATTCAGTCACTGGTCGGCGGTGTTGAAGTCGATCTGGATACCGCCTTGCCGGCAGA
TGATGAATGA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
AlphaFold DBG0A7T7

Antitoxin

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Source
ID
Structure
No matching records found

References