Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) higBA (relBE)/COG4683-HTH_37
Location 477963..478609 Replicon chromosome
Accession NZ_CP103567
Organism Klebsiella pneumoniae strain 4680

Toxin (Protein)


Gene name higB Uniprot ID W9BBY1
Locus tag M5S58_RS02280 Protein ID WP_016529833.1
Coordinates 477963..478310 (+) Length 116 a.a.

Antitoxin (Protein)


Gene name higA Uniprot ID A0A231WWU8
Locus tag M5S58_RS02285 Protein ID WP_004174017.1
Coordinates 478310..478609 (+) Length 100 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
M5S58_RS02270 (473889) 473889..475322 + 1434 WP_002920564.1 glycogen synthase GlgA -
M5S58_RS02275 (475340) 475340..477787 + 2448 WP_002920561.1 glycogen phosphorylase -
M5S58_RS02280 (477963) 477963..478310 + 348 WP_016529833.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
M5S58_RS02285 (478310) 478310..478609 + 300 WP_004174017.1 XRE family transcriptional regulator Antitoxin
M5S58_RS02290 (478672) 478672..480180 - 1509 WP_002920554.1 glycerol-3-phosphate dehydrogenase -
M5S58_RS02295 (480385) 480385..480714 + 330 WP_002920552.1 thiosulfate sulfurtransferase GlpE -
M5S58_RS02300 (480765) 480765..481595 + 831 WP_032428425.1 rhomboid family intramembrane serine protease GlpG -
M5S58_RS02305 (481645) 481645..482403 + 759 WP_002920548.1 DeoR/GlpR family transcriptional regulator -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin HigB-like

(13-107)

Antitoxin

Cro/C1-type helix-turn-helix domain

(31-84)


Sequences

Toxin        


Download         Length: 116 a.a.        Molecular weight: 13549.56 Da        Isoelectric Point: 5.6749

>T255593 WP_016529833.1 NZ_CP103567:477963-478310 [Klebsiella pneumoniae]
MWDVETTDTFDTWFELQSRALKEDMLATMLILSEFAPQLGRPYVDTVKDSTFQNMKELRVQHHGLPIRAFFAFDPLRKAI
VLCAGDKDGMNEKRFYKEMITLADREFSQHLTKER

Download         Length: 348 bp

Antitoxin


Download         Length: 100 a.a.        Molecular weight: 10844.64 Da        Isoelectric Point: 10.1464

>AT255593 WP_004174017.1 NZ_CP103567:478310-478609 [Klebsiella pneumoniae]
MATLKELMAKQSPESQQRIAAKAAEIRQSVALNLLREELQMSQTEMAAAMGVKQPTIAKMEQTDNDPRLSTLKRYIAALG
GELSINVTLPTGKKVSFNL

Download         Length: 300 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB W9BBY1

Antitoxin

Source ID Structure
AlphaFold DB A0A231WWU8

References