Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type II Classification (family/domain) higBA (relBE)/Gp49-HTH_37
Location 2245728..2246596 Replicon chromosome
Accession NC_015848
Organism Mycobacterium canettii CIPT 140010059

Toxin (Protein)


Gene name higB Uniprot ID -
Locus tag MCAN_RS10275 Protein ID WP_162138899.1
Coordinates 2245728..2246105 (+) Length 126 a.a.

Antitoxin (Protein)


Gene name higA Uniprot ID G0TLM0
Locus tag MCAN_RS10280 Protein ID WP_003409886.1
Coordinates 2246147..2246596 (+) Length 150 a.a.

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
MCAN_RS10230 2241515..2241967 - 453 WP_003899095.1 lipoprotein -
MCAN_RS10235 2242031..2242432 + 402 WP_003409869.1 hypothetical protein -
MCAN_RS10240 2242425..2242607 - 183 WP_003409870.1 hypothetical protein -
MCAN_RS10245 2242721..2243071 - 351 WP_003409871.1 hypothetical protein -
MCAN_RS10250 2243082..2243984 - 903 WP_080603716.1 hypothetical protein -
MCAN_RS21435 2244005..2244197 - 193 Protein_2013 hypothetical protein -
MCAN_RS10255 2244198..2244494 - 297 WP_014001026.1 hypothetical protein -
MCAN_RS10260 2244735..2244950 + 216 WP_003409878.1 antitoxin -
MCAN_RS10265 2244947..2245258 + 312 WP_003409881.1 type II toxin-antitoxin system VapC family toxin -
MCAN_RS22805 2245232..2245753 - 522 WP_014001027.1 hypothetical protein -
MCAN_RS10275 2245728..2246105 + 378 WP_162138899.1 type II toxin-antitoxin system toxin HigB Toxin
MCAN_RS10280 2246147..2246596 + 450 WP_003409886.1 type II toxin-antitoxin system antitoxin HigA Antitoxin
MCAN_RS10285 2246593..2247138 + 546 WP_003409891.1 SecB-like chaperone -
MCAN_RS10290 2247027..2247641 - 615 WP_014001029.1 hypothetical protein -
MCAN_RS10295 2247691..2247987 - 297 WP_003409896.1 type II toxin-antitoxin system RelE/ParE family toxin -
MCAN_RS10300 2247984..2248235 - 252 WP_014001030.1 type II toxin-antitoxin system ParD family antitoxin -
MCAN_RS10305 2248222..2248713 + 492 WP_014001031.1 hypothetical protein -
MCAN_RS10310 2248873..2249280 - 408 WP_003409913.1 type II toxin-antitoxin system VapC family toxin -
MCAN_RS10315 2249284..2249556 - 273 WP_003899100.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
MCAN_RS10320 2249589..2250809 - 1221 WP_014001032.1 TetR family transcriptional regulator Mce3R -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains


Predicted by InterproScan

Toxin

(27-113)

Antitoxin

(44-91)


Sequences


Toxin        


Download         Length: 126 a.a.        Molecular weight: 14464.85 Da        Isoelectric Point: 11.0198

>T25531 WP_162138899.1 NC_015848:2245728-2246105 [Mycobacterium canettii CIPT 140010059]
VPPPDPRAIGTWKFFRASVDGRPVFKKEFDKLPDQARAALIVLMQRYLVGDLAAGSIKPIRGDILELRWHEANNHFRVLF
FRWGQHPVALTAFYKNQQKTPKTKIETALDRQKIWKRAFGDTPPI

Download         Length: 378 bp

>T25531 NC_015848:2245728-2246105 [Mycobacterium canettii CIPT 140010059]
GTGCCGCCCCCTGATCCACGCGCCATAGGTACCTGGAAGTTCTTCCGGGCATCTGTGGATGGCCGGCCGGTATTCAAGAA
GGAGTTCGACAAGCTTCCTGATCAGGCCCGGGCCGCGCTGATCGTGCTAATGCAGCGGTATCTCGTCGGCGACCTCGCCG
CAGGGAGCATCAAACCGATTCGTGGCGACATTCTGGAGTTGCGATGGCATGAGGCGAACAACCACTTCCGGGTACTGTTC
TTCCGCTGGGGCCAGCATCCCGTAGCGCTGACAGCGTTCTACAAGAACCAGCAGAAGACTCCCAAGACGAAGATCGAGAC
GGCCCTGGACCGGCAGAAAATCTGGAAAAGAGCCTTCGGCGACACCCCACCGATCTGA

Antitoxin


Download         Length: 150 a.a.        Molecular weight: 16760.16 Da        Isoelectric Point: 8.0771

>AT25531 WP_003409886.1 NC_015848:2246147-2246596 [Mycobacterium canettii CIPT 140010059]
MSIDFPLGDDLAGYIAEAIAADPSFKGTLEDAEEARRLVDALIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLS
TLQRYARALDARLRLVLEVPTLREVPTWHRLSSYRGSARDHQVRVGADKEILMQTNWARHISVRQVEVA

Download         Length: 450 bp

>AT25531 NC_015848:2246147-2246596 [Mycobacterium canettii CIPT 140010059]
ATGAGCATTGACTTCCCTTTGGGTGACGACCTCGCCGGCTATATTGCCGAGGCGATTGCGGCTGATCCCAGCTTCAAAGG
CACTCTCGAAGACGCCGAGGAGGCACGCAGGCTGGTCGATGCGCTGATTGCGCTGCGCAAGCACTGCCAGCTGAGCCAGG
TTGAGGTTGCTAAGCGTATGGGGGTGCGCCAGCCCACCGTGAGCGGTTTCGAGAAGGAACCCAGCGACCCCAAACTGTCT
ACGCTGCAACGTTATGCCCGTGCATTGGACGCCCGGCTGCGGCTGGTGCTCGAAGTTCCCACGCTTCGCGAAGTGCCTAC
GTGGCATCGGCTCTCCTCTTATCGGGGCTCCGCACGGGACCACCAGGTCCGGGTGGGTGCAGACAAGGAAATCCTGATGC
AGACGAACTGGGCCCGCCACATTTCGGTTCGGCAGGTTGAGGTGGCATGA

Similar Proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures


Toxin

Source ID Structure


Antitoxin

Source ID Structure
PDB 5MTW
AlphaFold DB G0TLM0

References