Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) prlF-yhaV (relBE)/YhaV-PrlF
Location 327205..328026 Replicon plasmid unnamed1
Accession NZ_CP103402
Organism Pantoea agglomerans strain CHTF15

Toxin (Protein)


Gene name yhaV Uniprot ID -
Locus tag NYF24_RS20230 Protein ID WP_256849619.1
Coordinates 327205..327675 (-) Length 157 a.a.

Antitoxin (Protein)


Gene name prlF Uniprot ID -
Locus tag NYF24_RS20235 Protein ID WP_132498989.1
Coordinates 327682..328026 (-) Length 115 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NYF24_RS20220 (NYF24_20220) 322529..324931 + 2403 WP_258995947.1 maltodextrin phosphorylase -
NYF24_RS20225 (NYF24_20225) 324940..327015 + 2076 WP_258995948.1 4-alpha-glucanotransferase -
NYF24_RS20230 (NYF24_20230) 327205..327675 - 471 WP_256849619.1 type II toxin-antitoxin system YhaV family toxin Toxin
NYF24_RS20235 (NYF24_20235) 327682..328026 - 345 WP_132498989.1 type II toxin-antitoxin system PrlF family antitoxin Antitoxin
NYF24_RS20240 (NYF24_20240) 328126..328341 - 216 WP_033780170.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
NYF24_RS20245 (NYF24_20245) 328530..329468 - 939 WP_010247352.1 maltose operon protein MalM -
NYF24_RS20250 (NYF24_20250) 329571..330872 - 1302 WP_033760237.1 maltoporin -
NYF24_RS20255 (NYF24_20255) 330916..332025 - 1110 WP_010247360.1 maltose/maltodextrin ABC transporter ATP-binding protein MalK -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Non-Mobilizable plasmid - iroN 1..514938 514938


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin endonuclease, YhaV

(12-148)

Antitoxin

PrlF antitoxin

(15-113)


Sequences

Toxin        


Download         Length: 157 a.a.        Molecular weight: 18195.73 Da        Isoelectric Point: 8.6601

>T255003 WP_256849619.1 NZ_CP103402:c327675-327205 [Pantoea agglomerans]
MEDSTVINGRHVYVHPCFESQLIALTNEVELLRAKYPESYQRKATTKLLAAVFKVINSEICADPHQAKFRQGDTLGEQNK
HWFRAKFLMQYRLFFRFSEQHKTIILAWMNDAETKCAYGSKRDAYKVFSGMLHNGYPPDDWALLLKQSQDWANTNS

Download         Length: 471 bp

Antitoxin


Download         Length: 115 a.a.        Molecular weight: 12274.00 Da        Isoelectric Point: 4.5917

>AT255003 WP_132498989.1 NZ_CP103402:c328026-327682 [Pantoea agglomerans]
MGTLTQANISLRASSKLTARGQTTIPAAVRDAMNLQPGENIEYAVLQGGKVLITRQETVADDAPVKASFLSFLPADRRNT
AANIKMLDRGLLTRITSLTEGMDVDLDAPLMDDE

Download         Length: 345 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References