254069

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) higBA (relBE)/HTH(antitoxin)
Location 225994..226596 Replicon chromosome
Accession NZ_CP102719
Organism Salmonella enterica subsp. enterica serovar Kentucky isolate AH19MCS1

Toxin (Protein)


Gene name higB Uniprot ID A0A603E470
Locus tag NWA05_RS01155 Protein ID WP_023138876.1
Coordinates 225994..226305 (+) Length 104 a.a.

Antitoxin (Protein)


Gene name higA Uniprot ID -
Locus tag NWA05_RS01160 Protein ID WP_000362052.1
Coordinates 226306..226596 (+) Length 97 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NWA05_RS01120 (221107) 221107..221706 + 600 WP_000965695.1 glucose-1-phosphatase -
NWA05_RS01125 (221700) 221700..222572 + 873 WP_000921423.1 virulence factor BrkB family protein -
NWA05_RS01130 (222569) 222569..223006 + 438 WP_000560969.1 D-aminoacyl-tRNA deacylase -
NWA05_RS01135 (223051) 223051..223992 + 942 WP_001518251.1 fatty acid biosynthesis protein FabY -
NWA05_RS01140 (224007) 224007..224453 - 447 WP_001259011.1 type II toxin-antitoxin system HigA family antitoxin -
NWA05_RS01145 (224450) 224450..224761 - 312 WP_000558166.1 type II toxin-antitoxin system HigB family toxin -
NWA05_RS01150 (224847) 224847..225776 - 930 WP_001127698.1 alpha/beta hydrolase -
NWA05_RS01155 (225994) 225994..226305 + 312 WP_023138876.1 hypothetical protein Toxin
NWA05_RS01160 (226306) 226306..226596 + 291 WP_000362052.1 DNA-binding transcriptional regulator Antitoxin
NWA05_RS01165 (226643) 226643..227572 - 930 WP_000027730.1 formate dehydrogenase accessory protein FdhE -
NWA05_RS01170 (227569) 227569..228204 - 636 WP_000829025.1 formate dehydrogenase cytochrome b556 subunit -
NWA05_RS01175 (228201) 228201..229103 - 903 WP_000331361.1 formate dehydrogenase subunit beta -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin


No domain identified.


Antitoxin

Cro/C1-type helix-turn-helix domain

(37-74)


Sequences

Toxin        


Download         Length: 104 a.a.        Molecular weight: 12356.30 Da        Isoelectric Point: 9.4460

>T254069 WP_023138876.1 NZ_CP102719:225994-226305 [Salmonella enterica subsp. enterica serovar Kentucky]
MQFIETELFTEDVKKLLDEDEYHKLQVFMAQHPDCGDVIQETGGLRKMRWGSRGKGKRSGVRIIYFHRSQRYEIRLLLIY
QKGIKDDLTPQEKAVLRMLNERW

Download         Length: 312 bp

Antitoxin


Download         Length: 97 a.a.        Molecular weight: 10970.65 Da        Isoelectric Point: 11.0303

>AT254069 WP_000362052.1 NZ_CP102719:226306-226596 [Salmonella enterica subsp. enterica serovar Kentucky]
MDKVLFERLTQSMSQMNEIIEGTRKPSRTFHIDAMKIKEIRQASGLSQSKFAELISVNVDTLRNWEQGRRSPTGPAKALL
RAIANDPRNVIQALRY

Download         Length: 291 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A603E470

Antitoxin

Source ID Structure

References