Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) higBA (relBE)/RelE-HTH
Location 3925365..3925969 Replicon chromosome
Accession NZ_CP102593
Organism Xanthomonas campestris pv. phormiicola strain CFBP 8444

Toxin (Protein)


Gene name higB Uniprot ID -
Locus tag NRY95_RS16305 Protein ID WP_228320555.1
Coordinates 3925649..3925969 (-) Length 107 a.a.

Antitoxin (Protein)


Gene name higA Uniprot ID -
Locus tag NRY95_RS16300 Protein ID WP_228320554.1
Coordinates 3925365..3925652 (-) Length 96 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NRY95_RS16290 (NRY95_16295) 3920962..3924153 + 3192 WP_228320552.1 error-prone DNA polymerase -
NRY95_RS16295 (NRY95_16300) 3924204..3924494 - 291 WP_228320553.1 hypothetical protein -
NRY95_RS16300 (NRY95_16305) 3925365..3925652 - 288 WP_228320554.1 NadS family protein Antitoxin
NRY95_RS16305 (NRY95_16310) 3925649..3925969 - 321 WP_228320555.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
NRY95_RS16310 (NRY95_16315) 3926091..3926534 - 444 WP_228320556.1 nuclear transport factor 2 family protein -
NRY95_RS16315 (NRY95_16320) 3926658..3927380 + 723 WP_228320557.1 helix-turn-helix transcriptional regulator -
NRY95_RS16320 (NRY95_16325) 3927377..3928141 - 765 WP_228320559.1 endonuclease -
NRY95_RS16330 (NRY95_16335) 3929197..3929550 - 354 WP_228320561.1 PilZ domain-containing protein -
NRY95_RS16335 (NRY95_16340) 3929547..3930509 - 963 WP_228320562.1 DNA polymerase III subunit delta' -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin HigB-2

(42-102)

Antitoxin

Cro/C1-type helix-turn-helix domain

(35-72)


Sequences

Toxin        


Download         Length: 107 a.a.        Molecular weight: 12145.02 Da        Isoelectric Point: 9.7151

>T253875 WP_228320555.1 NZ_CP102593:c3925969-3925649 [Xanthomonas campestris pv. phormiicola]
MILVETPLFTRRVKELLDDETYSTFQVVLRENPEAGDLIEGTGGLRKVRVAAKGHGKRGGARVIYYHFVSIDTIALLMIY
PKNEQRDLTNAERKALKGIIEHWRYS

Download         Length: 321 bp

Antitoxin


Download         Length: 96 a.a.        Molecular weight: 10700.39 Da        Isoelectric Point: 10.5573

>AT253875 WP_228320554.1 NZ_CP102593:c3925652-3925365 [Xanthomonas campestris pv. phormiicola]
MSKFFEELMESVQQMDEIVRGERVPSREFHVDAIKVKEVRAATGLSQAKFAQVIDVQIGTLRNWEQGRRTPTGPAKALLR
AIKNDPKHVLKALSA

Download         Length: 288 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References