Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | DinJ-YafQ (relBE)/YafQ-RelB |
Location | 245957..246498 | Replicon | chromosome |
Accession | NZ_CP102380 | ||
Organism | Escherichia coli strain BM28 |
Toxin (Protein)
Gene name | yafQ | Uniprot ID | Q47149 |
Locus tag | NR349_RS01145 | Protein ID | WP_000615983.1 |
Coordinates | 245957..246235 (-) | Length | 93 a.a. |
Antitoxin (Protein)
Gene name | dinJ | Uniprot ID | Q47150 |
Locus tag | NR349_RS01150 | Protein ID | WP_000729703.1 |
Coordinates | 246238..246498 (-) | Length | 87 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
NR349_RS01130 (243539) | 243539..244117 | + | 579 | WP_000284050.1 | D-sedoheptulose 7-phosphate isomerase | - |
NR349_RS01135 (244323) | 244323..245090 | + | 768 | WP_000333380.1 | class II glutamine amidotransferase | - |
NR349_RS01140 (245061) | 245061..245801 | - | 741 | WP_001225679.1 | peptidoglycan meso-diaminopimelic acid protein amidase | - |
NR349_RS01145 (245957) | 245957..246235 | - | 279 | WP_000615983.1 | type II toxin-antitoxin system mRNA interferase toxin YafQ | Toxin |
NR349_RS01150 (246238) | 246238..246498 | - | 261 | WP_000729703.1 | type II toxin-antitoxin system antitoxin DinJ | Antitoxin |
NR349_RS01155 (246708) | 246708..247457 | + | 750 | WP_000056849.1 | C40 family peptidase | - |
NR349_RS01160 (247633) | 247633..248130 | + | 498 | WP_000006255.1 | REP-associated tyrosine transposase RayT | - |
NR349_RS01165 (248354) | 248354..250066 | - | 1713 | Protein_225 | flagellar biosynthesis protein FlhA | - |
NR349_RS01170 (250038) | 250038..250823 | + | 786 | WP_000207552.1 | putative lateral flagellar export/assembly protein LafU | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Genomic island | formA / tet(B) | gmhA/lpcA | 234024..281314 | 47290 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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