Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type I Classification (family/domain) ldrD-rdlD/Ldr(toxin)
Location 1280339..1280561 Replicon chromosome
Accession NZ_CP102378
Organism Escherichia coli strain JB41

Toxin (Protein)


Gene name ldrD Uniprot ID J7R083
Locus tag NR351_RS06310 Protein ID WP_000170963.1
Coordinates 1280339..1280446 (-) Length 36 a.a.

Antitoxin (RNA)


Gene name rdlD
Locus tag -
Coordinates 1280494..1280561 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NR351_RS06280 (1275648) 1275648..1276730 + 1083 WP_000804726.1 peptide chain release factor 1 -
NR351_RS06285 (1276730) 1276730..1277563 + 834 WP_000456467.1 peptide chain release factor N(5)-glutamine methyltransferase -
NR351_RS06290 (1277560) 1277560..1277952 + 393 WP_000200374.1 invasion regulator SirB2 -
NR351_RS06295 (1277956) 1277956..1278765 + 810 WP_001257044.1 invasion regulator SirB1 -
NR351_RS06300 (1278801) 1278801..1279655 + 855 WP_000811065.1 3-deoxy-8-phosphooctulonate synthase -
NR351_RS06305 (1279804) 1279804..1279911 - 108 WP_000170955.1 type I toxin-antitoxin system toxin Ldr family protein -
- (1279959) 1279959..1280025 + 67 NuclAT_34 - -
- (1279959) 1279959..1280025 + 67 NuclAT_34 - -
- (1279959) 1279959..1280025 + 67 NuclAT_34 - -
- (1279959) 1279959..1280025 + 67 NuclAT_34 - -
- (1279959) 1279959..1280025 + 67 NuclAT_36 - -
- (1279959) 1279959..1280025 + 67 NuclAT_36 - -
- (1279959) 1279959..1280025 + 67 NuclAT_36 - -
- (1279959) 1279959..1280025 + 67 NuclAT_36 - -
- (1279959) 1279959..1280025 + 67 NuclAT_38 - -
- (1279959) 1279959..1280025 + 67 NuclAT_38 - -
- (1279959) 1279959..1280025 + 67 NuclAT_38 - -
- (1279959) 1279959..1280025 + 67 NuclAT_38 - -
- (1279959) 1279959..1280025 + 67 NuclAT_40 - -
- (1279959) 1279959..1280025 + 67 NuclAT_40 - -
- (1279959) 1279959..1280025 + 67 NuclAT_40 - -
- (1279959) 1279959..1280025 + 67 NuclAT_40 - -
- (1279959) 1279959..1280025 + 67 NuclAT_42 - -
- (1279959) 1279959..1280025 + 67 NuclAT_42 - -
- (1279959) 1279959..1280025 + 67 NuclAT_42 - -
- (1279959) 1279959..1280025 + 67 NuclAT_42 - -
- (1279959) 1279959..1280025 + 67 NuclAT_44 - -
- (1279959) 1279959..1280025 + 67 NuclAT_44 - -
- (1279959) 1279959..1280025 + 67 NuclAT_44 - -
- (1279959) 1279959..1280025 + 67 NuclAT_44 - -
- (1279961) 1279961..1280026 + 66 NuclAT_18 - -
- (1279961) 1279961..1280026 + 66 NuclAT_18 - -
- (1279961) 1279961..1280026 + 66 NuclAT_18 - -
- (1279961) 1279961..1280026 + 66 NuclAT_18 - -
- (1279961) 1279961..1280026 + 66 NuclAT_21 - -
- (1279961) 1279961..1280026 + 66 NuclAT_21 - -
- (1279961) 1279961..1280026 + 66 NuclAT_21 - -
- (1279961) 1279961..1280026 + 66 NuclAT_21 - -
- (1279961) 1279961..1280026 + 66 NuclAT_24 - -
- (1279961) 1279961..1280026 + 66 NuclAT_24 - -
- (1279961) 1279961..1280026 + 66 NuclAT_24 - -
- (1279961) 1279961..1280026 + 66 NuclAT_24 - -
- (1279961) 1279961..1280026 + 66 NuclAT_27 - -
- (1279961) 1279961..1280026 + 66 NuclAT_27 - -
- (1279961) 1279961..1280026 + 66 NuclAT_27 - -
- (1279961) 1279961..1280026 + 66 NuclAT_27 - -
- (1279961) 1279961..1280026 + 66 NuclAT_30 - -
- (1279961) 1279961..1280026 + 66 NuclAT_30 - -
- (1279961) 1279961..1280026 + 66 NuclAT_30 - -
- (1279961) 1279961..1280026 + 66 NuclAT_30 - -
- (1279961) 1279961..1280026 + 66 NuclAT_33 - -
- (1279961) 1279961..1280026 + 66 NuclAT_33 - -
- (1279961) 1279961..1280026 + 66 NuclAT_33 - -
- (1279961) 1279961..1280026 + 66 NuclAT_33 - -
NR351_RS06310 (1280339) 1280339..1280446 - 108 WP_000170963.1 type I toxin-antitoxin system toxin Ldr family protein Toxin
- (1280495) 1280495..1280560 + 66 NuclAT_35 - -
- (1280495) 1280495..1280560 + 66 NuclAT_35 - -
- (1280495) 1280495..1280560 + 66 NuclAT_35 - -
- (1280495) 1280495..1280560 + 66 NuclAT_35 - -
- (1280495) 1280495..1280560 + 66 NuclAT_37 - -
- (1280495) 1280495..1280560 + 66 NuclAT_37 - -
- (1280495) 1280495..1280560 + 66 NuclAT_37 - -
- (1280495) 1280495..1280560 + 66 NuclAT_37 - -
- (1280495) 1280495..1280560 + 66 NuclAT_39 - -
- (1280495) 1280495..1280560 + 66 NuclAT_39 - -
- (1280495) 1280495..1280560 + 66 NuclAT_39 - -
- (1280495) 1280495..1280560 + 66 NuclAT_39 - -
- (1280495) 1280495..1280560 + 66 NuclAT_41 - -
- (1280495) 1280495..1280560 + 66 NuclAT_41 - -
- (1280495) 1280495..1280560 + 66 NuclAT_41 - -
- (1280495) 1280495..1280560 + 66 NuclAT_41 - -
- (1280495) 1280495..1280560 + 66 NuclAT_43 - -
- (1280495) 1280495..1280560 + 66 NuclAT_43 - -
- (1280495) 1280495..1280560 + 66 NuclAT_43 - -
- (1280495) 1280495..1280560 + 66 NuclAT_43 - -
- (1280495) 1280495..1280560 + 66 NuclAT_45 - -
- (1280495) 1280495..1280560 + 66 NuclAT_45 - -
- (1280495) 1280495..1280560 + 66 NuclAT_45 - -
- (1280495) 1280495..1280560 + 66 NuclAT_45 - -
- (1280494) 1280494..1280561 + 68 NuclAT_17 - Antitoxin
- (1280494) 1280494..1280561 + 68 NuclAT_17 - Antitoxin
- (1280494) 1280494..1280561 + 68 NuclAT_17 - Antitoxin
- (1280494) 1280494..1280561 + 68 NuclAT_17 - Antitoxin
- (1280494) 1280494..1280561 + 68 NuclAT_20 - Antitoxin
- (1280494) 1280494..1280561 + 68 NuclAT_20 - Antitoxin
- (1280494) 1280494..1280561 + 68 NuclAT_20 - Antitoxin
- (1280494) 1280494..1280561 + 68 NuclAT_20 - Antitoxin
- (1280494) 1280494..1280561 + 68 NuclAT_23 - Antitoxin
- (1280494) 1280494..1280561 + 68 NuclAT_23 - Antitoxin
- (1280494) 1280494..1280561 + 68 NuclAT_23 - Antitoxin
- (1280494) 1280494..1280561 + 68 NuclAT_23 - Antitoxin
- (1280494) 1280494..1280561 + 68 NuclAT_26 - Antitoxin
- (1280494) 1280494..1280561 + 68 NuclAT_26 - Antitoxin
- (1280494) 1280494..1280561 + 68 NuclAT_26 - Antitoxin
- (1280494) 1280494..1280561 + 68 NuclAT_26 - Antitoxin
- (1280494) 1280494..1280561 + 68 NuclAT_29 - Antitoxin
- (1280494) 1280494..1280561 + 68 NuclAT_29 - Antitoxin
- (1280494) 1280494..1280561 + 68 NuclAT_29 - Antitoxin
- (1280494) 1280494..1280561 + 68 NuclAT_29 - Antitoxin
- (1280494) 1280494..1280561 + 68 NuclAT_32 - Antitoxin
- (1280494) 1280494..1280561 + 68 NuclAT_32 - Antitoxin
- (1280494) 1280494..1280561 + 68 NuclAT_32 - Antitoxin
- (1280494) 1280494..1280561 + 68 NuclAT_32 - Antitoxin
NR351_RS06315 (1280874) 1280874..1280981 - 108 WP_000170955.1 type I toxin-antitoxin system toxin Ldr family protein -
- (1281029) 1281029..1281096 + 68 NuclAT_16 - -
- (1281029) 1281029..1281096 + 68 NuclAT_16 - -
- (1281029) 1281029..1281096 + 68 NuclAT_16 - -
- (1281029) 1281029..1281096 + 68 NuclAT_16 - -
- (1281029) 1281029..1281096 + 68 NuclAT_19 - -
- (1281029) 1281029..1281096 + 68 NuclAT_19 - -
- (1281029) 1281029..1281096 + 68 NuclAT_19 - -
- (1281029) 1281029..1281096 + 68 NuclAT_19 - -
- (1281029) 1281029..1281096 + 68 NuclAT_22 - -
- (1281029) 1281029..1281096 + 68 NuclAT_22 - -
- (1281029) 1281029..1281096 + 68 NuclAT_22 - -
- (1281029) 1281029..1281096 + 68 NuclAT_22 - -
- (1281029) 1281029..1281096 + 68 NuclAT_25 - -
- (1281029) 1281029..1281096 + 68 NuclAT_25 - -
- (1281029) 1281029..1281096 + 68 NuclAT_25 - -
- (1281029) 1281029..1281096 + 68 NuclAT_25 - -
- (1281029) 1281029..1281096 + 68 NuclAT_28 - -
- (1281029) 1281029..1281096 + 68 NuclAT_28 - -
- (1281029) 1281029..1281096 + 68 NuclAT_28 - -
- (1281029) 1281029..1281096 + 68 NuclAT_28 - -
- (1281029) 1281029..1281096 + 68 NuclAT_31 - -
- (1281029) 1281029..1281096 + 68 NuclAT_31 - -
- (1281029) 1281029..1281096 + 68 NuclAT_31 - -
- (1281029) 1281029..1281096 + 68 NuclAT_31 - -
NR351_RS06320 (1281385) 1281385..1282485 - 1101 WP_000063607.1 sodium-potassium/proton antiporter ChaA -
NR351_RS06325 (1282755) 1282755..1282985 + 231 WP_001146444.1 putative cation transport regulator ChaB -
NR351_RS06330 (1283143) 1283143..1283838 + 696 WP_001336325.1 glutathione-specific gamma-glutamylcyclotransferase -
NR351_RS06335 (1283882) 1283882..1284235 - 354 WP_001169669.1 DsrE/F sulfur relay family protein YchN -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Type I toxin-antitoxin system, toxin Ldr

(1-35)


Sequences

Toxin        


Download         Length: 36 a.a.        Molecular weight: 3971.74 Da        Isoelectric Point: 11.4779

>T253495 WP_000170963.1 NZ_CP102378:c1280446-1280339 [Escherichia coli]
MTLAQFAMTFWHDLAAPILAGIITAAIVGWWRNRK

Download         Length: 108 bp

Antitoxin


Download         Length: 68 bp

>AT253495 NZ_CP102378:1280494-1280561 [Escherichia coli]
GTCTGGTTTCAAGATTAGCCCCCGTTCTGTTGTCAGGTTTTACCTCTCAACGTGCGGGGGTTTTCTCT

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Download structure file

References