253476

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) higBA (relBE)/-
Location 4339272..4339926 Replicon chromosome
Accession NZ_CP102358
Organism Pseudomonas zeae strain BIM B-582

Toxin (Protein)


Gene name higB Uniprot ID -
Locus tag NQ186_RS19255 Protein ID WP_116256087.1
Coordinates 4339272..4339622 (+) Length 117 a.a.

Antitoxin (Protein)


Gene name higA Uniprot ID -
Locus tag NQ186_RS19260 Protein ID WP_027614657.1
Coordinates 4339612..4339926 (+) Length 105 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NQ186_RS19245 (NQ186_19245) 4335819..4337351 + 1533 WP_077573624.1 NADH-quinone oxidoreductase subunit M -
NQ186_RS19250 (NQ186_19250) 4337359..4338822 + 1464 WP_008082842.1 NADH-quinone oxidoreductase subunit NuoN -
NQ186_RS19255 (NQ186_19255) 4339272..4339622 + 351 WP_116256087.1 toxin Toxin
NQ186_RS19260 (NQ186_19260) 4339612..4339926 + 315 WP_027614657.1 transcriptional regulator Antitoxin
NQ186_RS19265 (NQ186_19265) 4340100..4341425 + 1326 WP_257355518.1 OprD family porin -
NQ186_RS19270 (NQ186_19270) 4341584..4342105 - 522 WP_093434262.1 hypothetical protein -
NQ186_RS19275 (NQ186_19275) 4342063..4342353 - 291 WP_041073246.1 DUF1778 domain-containing protein -
NQ186_RS19280 (NQ186_19280) 4342643..4343023 - 381 WP_099756649.1 DUF6124 family protein -
NQ186_RS19285 (NQ186_19285) 4343433..4343765 - 333 WP_116256076.1 DUF2790 domain-containing protein -
NQ186_RS19290 (NQ186_19290) 4343843..4344046 - 204 WP_257355520.1 co-regulatory protein PtrA N-terminal domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin


No domain identified.


Antitoxin

Cro/C1-type helix-turn-helix domain

(41-100)


Sequences

Toxin        


Download         Length: 117 a.a.        Molecular weight: 13994.81 Da        Isoelectric Point: 7.2021

>T253476 WP_116256087.1 NZ_CP102358:4339272-4339622 [Pseudomonas zeae]
MDALFIELPVFQKHRDDYLDDDLFRSFQLELLKNPEAGDLIEDTGGLRKIRFGDQRRGKGKRSGLRVIYYWWSGFDQFWL
FTVYNKNEQDDLTPAQKKLFRKTLDRELNVRTHYET

Download         Length: 351 bp

Antitoxin


Download         Length: 105 a.a.        Molecular weight: 11950.86 Da        Isoelectric Point: 9.9896

>AT253476 WP_027614657.1 NZ_CP102358:4339612-4339926 [Pseudomonas zeae]
MKRDIFSELMDGLEALADERQGKITLRTHKVQLPKLMPITAEEVIAIRQQLNLSRSVFAMYLRTNTRTLENWEQGRATPN
AQATTLIRLVERFPQTIEQLAALT

Download         Length: 315 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References