253404

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type III Classification (family/domain) cptIN/-
Location 3071265..3071665 Replicon chromosome
Accession NZ_CP102268
Organism Marvinbryantia formatexigens DSM 14469

Toxin (Protein)


Gene name cptN Uniprot ID -
Locus tag NQ534_RS14420 Protein ID WP_006863777.1
Coordinates 3071411..3071665 (+) Length 85 a.a.

Antitoxin (RNA)


Gene name cptI
Locus tag -
Coordinates 3071265..3071308 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NQ534_RS14395 (3067203) 3067203..3067580 + 378 WP_006863771.1 hypothetical protein -
NQ534_RS14400 (3067682) 3067682..3068662 + 981 WP_040784889.1 AAA family ATPase -
NQ534_RS14405 (3068982) 3068982..3070331 + 1350 WP_006863774.1 plasmid recombination protein -
NQ534_RS14410 (3070346) 3070346..3070660 + 315 WP_176944209.1 hypothetical protein -
NQ534_RS14415 (3070766) 3070766..3071218 + 453 WP_040784854.1 hypothetical protein -
- (3071265) 3071265..3071308 + 44 NuclAT_0 - Antitoxin
- (3071265) 3071265..3071308 + 44 NuclAT_0 - Antitoxin
- (3071265) 3071265..3071308 + 44 NuclAT_0 - Antitoxin
- (3071265) 3071265..3071308 + 44 NuclAT_0 - Antitoxin
NQ534_RS14420 (3071411) 3071411..3071665 + 255 WP_006863777.1 hypothetical protein Toxin
NQ534_RS14425 (3071674) 3071674..3071874 + 201 WP_006863778.1 hypothetical protein -
NQ534_RS14430 (3072289) 3072289..3072705 + 417 WP_006863779.1 YjdF family protein -
NQ534_RS14435 (3072786) 3072786..3073292 + 507 WP_006863780.1 hypothetical protein -
NQ534_RS14440 (3073585) 3073585..3074097 + 513 WP_006863782.1 RNA polymerase sigma factor -
NQ534_RS14445 (3074100) 3074100..3074855 + 756 WP_040784856.1 hypothetical protein -
NQ534_RS14450 (3075098) 3075098..3075319 + 222 Protein_2842 ATP-binding cassette domain-containing protein -
NQ534_RS14455 (3075294) 3075294..3076103 + 810 WP_242655406.1 ABC transporter permease -
NQ534_RS14460 (3076022) 3076022..3076402 + 381 WP_143115847.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Integrative and Conjugative Element - clpP / tufA 2787996..3112551 324555


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin


No domain identified.



Sequences

Toxin        


Download         Length: 85 a.a.        Molecular weight: 9997.53 Da        Isoelectric Point: 10.0456

>T253404 WP_006863777.1 NZ_CP102268:3071411-3071665 [Marvinbryantia formatexigens DSM 14469]
MKKTGFYIIKDKFFEDMPDPYLKGNRAGNRPHYYCFEDTSTGIYWMIPLSSRIDKYRRIMEKKPGNLATFFISSNWTTAG
RVHF

Download         Length: 255 bp

Antitoxin


Download         Length: 44 bp

>AT253404 NZ_CP102268:3071265-3071308 [Marvinbryantia formatexigens DSM 14469]
GAAGGTCTACCACTGACCGATATGTGGTATATAAATGGTCGGGT

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Download structure file

References