Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) prlF-yhaV (relBE)/YhaV-PrlF
Location 656146..656945 Replicon chromosome
Accession NZ_CP101615
Organism Escherichia coli strain DC71

Toxin (Protein)


Gene name yhaV Uniprot ID S1NYM6
Locus tag NOF56_RS03210 Protein ID WP_000347251.1
Coordinates 656146..656610 (-) Length 155 a.a.

Antitoxin (Protein)


Gene name prlF Uniprot ID S1EB98
Locus tag NOF56_RS03215 Protein ID WP_001307405.1
Coordinates 656610..656945 (-) Length 112 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NOF56_RS03180 (651147) 651147..651581 - 435 WP_000948824.1 PTS galactosamine/N-acetylgalactosamine transporter subunit IIA -
NOF56_RS03185 (651599) 651599..652477 - 879 WP_001295548.1 PTS N-acetylgalactosamine transporter subunit IID -
NOF56_RS03190 (652467) 652467..653246 - 780 WP_000406214.1 PTS N-acetylgalactosamine transporter subunit IIC -
NOF56_RS03195 (653257) 653257..653730 - 474 WP_001295547.1 PTS N-acetylgalactosamine transporter subunit IIB -
NOF56_RS03200 (653753) 653753..655033 - 1281 WP_000681903.1 tagatose-bisphosphate aldolase subunit KbaZ -
NOF56_RS03205 (655282) 655282..656091 + 810 WP_000072187.1 aga operon transcriptional regulator AgaR -
NOF56_RS03210 (656146) 656146..656610 - 465 WP_000347251.1 type II toxin-antitoxin system ribonuclease toxin YhaV Toxin
NOF56_RS03215 (656610) 656610..656945 - 336 WP_001307405.1 type II toxin-antitoxin system antitoxin PrlF Antitoxin
NOF56_RS03220 (657094) 657094..658665 - 1572 WP_001273761.1 galactarate dehydratase -
NOF56_RS03225 (659040) 659040..660374 + 1335 WP_000599652.1 galactarate/glucarate/glycerate transporter GarP -
NOF56_RS03230 (660390) 660390..661160 + 771 WP_001058214.1 2-dehydro-3-deoxyglucarate aldolase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin endonuclease, YhaV

(12-150)

Antitoxin

PrlF antitoxin

(14-110)


Sequences

Toxin        


Download         Length: 155 a.a.        Molecular weight: 17777.14 Da        Isoelectric Point: 9.4947

>T252382 WP_000347251.1 NZ_CP101615:c656610-656146 [Escherichia coli]
MDFPQRVNGWALYAHPCFQETYDALVAEVEALKGKDPENYQRKAATKLLAVVHKVIEEHITVNPSSPAFRHGKSLGSGKN
KDWSRVKFGAGRYRLFFRYSEKEKVIILGWMNDENTLRTYGKKTDAYTVFSKMLKRGHPPADWESLTQETEENH

Download         Length: 465 bp

Antitoxin


Download         Length: 112 a.a.        Molecular weight: 12358.94 Da        Isoelectric Point: 4.8616

>AT252382 WP_001307405.1 NZ_CP101615:c656945-656610 [Escherichia coli]
MPANARSHAVLTTESKVTIRGQTTIPAPVREALKLKPGQDSIHYEILPGGQVFMCRLGDEQEDHTMNAFLRFLDADIQNN
PQKTRPFNIQQGKKLVAGMDVNIDDEIGDDE

Download         Length: 336 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A829CJ20

Antitoxin

Source ID Structure
AlphaFold DB A0A0E0XVC7

References