Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | higBA (relBE)/HigB-HigA |
Location | 6479582..6480174 | Replicon | chromosome |
Accession | NZ_CP101125 | ||
Organism | Pseudomonas nunensis strain In5 |
Toxin (Protein)
Gene name | higB | Uniprot ID | - |
Locus tag | NK667_RS28495 | Protein ID | WP_054617026.1 |
Coordinates | 6479582..6479860 (+) | Length | 93 a.a. |
Antitoxin (Protein)
Gene name | graA | Uniprot ID | A0A6L5BL31 |
Locus tag | NK667_RS28500 | Protein ID | WP_054617025.1 |
Coordinates | 6479869..6480174 (+) | Length | 102 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
NK667_RS28475 (NK667_28475) | 6475673..6476887 | + | 1215 | WP_054617029.1 | aldose 1-epimerase family protein | - |
NK667_RS28480 (NK667_28480) | 6476940..6477242 | - | 303 | WP_054048502.1 | hypothetical protein | - |
NK667_RS28485 (NK667_28485) | 6477293..6478786 | - | 1494 | WP_054617028.1 | YifB family Mg chelatase-like AAA ATPase | - |
NK667_RS28490 (NK667_28490) | 6479162..6479332 | - | 171 | WP_177331480.1 | hypothetical protein | - |
NK667_RS28495 (NK667_28495) | 6479582..6479860 | + | 279 | WP_054617026.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
NK667_RS28500 (NK667_28500) | 6479869..6480174 | + | 306 | WP_054617025.1 | HigA family addiction module antitoxin | Antitoxin |
NK667_RS28505 (NK667_28505) | 6480228..6480755 | - | 528 | WP_054617024.1 | Bro-N domain-containing protein | - |
NK667_RS28510 (NK667_28510) | 6481199..6481459 | - | 261 | WP_054048512.1 | accessory factor UbiK family protein | - |
NK667_RS28515 (NK667_28515) | 6481875..6482213 | + | 339 | WP_002555808.1 | P-II family nitrogen regulator | - |
NK667_RS28520 (NK667_28520) | 6482249..6483586 | + | 1338 | WP_054048514.1 | ammonium transporter | - |
NK667_RS28525 (NK667_28525) | 6483800..6484225 | + | 426 | WP_054048516.1 | secondary thiamine-phosphate synthase enzyme YjbQ | - |
NK667_RS28530 (NK667_28530) | 6484328..6484651 | + | 324 | WP_054617023.1 | transcriptional regulator SutA | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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