Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) prlF-yhaV (relBE)/YhaV-PrlF
Location 87418..88245 Replicon chromosome
Accession NC_015061
Organism Rahnella sp. Y9602

Toxin (Protein)


Gene name yhaV Uniprot ID A0A0H3F9D7
Locus tag RAHAQ_RS00410 Protein ID WP_013573434.1
Coordinates 87418..87894 (-) Length 159 a.a.

Antitoxin (Protein)


Gene name prlF Uniprot ID A0A0H3F4N7
Locus tag RAHAQ_RS00415 Protein ID WP_013573435.1
Coordinates 87901..88245 (-) Length 115 a.a.

Genomic Context

RAHAQ_RS00385RAHAQ_RS00390RAHAQ_RS00395RAHAQ_RS00400RAHAQ_RS00410RAHAQ_RS00415RAHAQ_RS00420RAHAQ_RS00425RAHAQ_RS00430RAHAQ_RS00435RAHAQ_RS00440
Location: 82492..83937 (1446 bp)
Type: Others
Protein ID: WP_013573430.1
Location: 84008..84466 (459 bp)
Type: Others
Protein ID: WP_013573431.1
Location: 84601..85023 (423 bp)
Type: Others
Protein ID: WP_013573432.1
Location: 85295..86974 (1680 bp)
Type: Others
Protein ID: WP_013573433.1
Location: 87418..87894 (477 bp)
Type: Toxin
Protein ID: WP_013573434.1
Location: 87901..88245 (345 bp)
Type: Antitoxin
Protein ID: WP_013573435.1
Location: 88327..88488 (162 bp)
Type: Others
Protein ID: WP_071882947.1
Location: 88629..90008 (1380 bp)
Type: Others
Protein ID: WP_013573436.1
Location: 90028..90807 (780 bp)
Type: Others
Protein ID: WP_013573437.1
Location: 90807..91673 (867 bp)
Type: Others
Protein ID: WP_013573438.1
Location: 91666..92601 (936 bp)
Type: Others
Protein ID: WP_013573439.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
RAHAQ_RS0038582492..83937+1446WP_013573430.1alpha/beta hydrolase-
RAHAQ_RS0039084008..84466+459WP_013573431.1MarR family transcriptional regulator-
RAHAQ_RS0039584601..85023+423WP_013573432.1organic hydroperoxide resistance protein-
RAHAQ_RS0040085295..86974+1680WP_013573433.1kdo(2)-lipid A phosphoethanolamine 7''-transferase-
RAHAQ_RS0041087418..87894-477WP_013573434.1type II toxin-antitoxin system YhaV family toxinToxin
RAHAQ_RS0041587901..88245-345WP_013573435.1type II toxin-antitoxin system PrlF family antitoxinAntitoxin
RAHAQ_RS0042088327..88488-162WP_071882947.1type II toxin-antitoxin system RelE/ParE family toxin-
RAHAQ_RS0042588629..90008-1380WP_013573436.1MmgE/PrpD family protein-
RAHAQ_RS0043090028..90807-780WP_013573437.1ABC transporter ATP-binding protein-
RAHAQ_RS0043590807..91673-867WP_013573438.1ABC transporter ATP-binding protein-
RAHAQ_RS0044091666..92601-936WP_013573439.1ABC transporter permease-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin endonuclease, YhaV

(13-148)

Antitoxin

SpoVT-AbrB domain

(15-53)


Sequences

Toxin        


Download         Length: 159 a.a.        Molecular weight: 18383.17 Da        Isoelectric Point: 9.7887

>T25094 WP_013573434.1 NC_015061:c87894-87418 [Rahnella sp. Y9602]
MHNQAMEINGWTLLAHPLILQQIQALTDQVVLLRRKDPAGYKSKNATKRLAAINKLMFDVIPQDPARVEFGQGDTLGGEF
SHWFRAKFFQQYRLFFRYNLKSRIIIYAWVNDDKELRAYESKTDAYRMFRKMLKSGEPPDNWQALCEASGKVAAEELP

Download         Length: 477 bp

>T25094 NC_015061:c87894-87418 [Rahnella sp. Y9602]
ATGCACAATCAGGCCATGGAGATTAACGGATGGACCCTTCTCGCTCATCCTCTGATCCTGCAACAAATACAGGCACTCAC
TGATCAGGTTGTTTTACTGCGTCGCAAAGATCCGGCGGGCTATAAAAGTAAGAACGCCACCAAACGGCTGGCTGCGATCA
ATAAGCTGATGTTTGACGTTATCCCGCAGGATCCGGCGCGTGTTGAATTCGGTCAGGGCGATACGTTAGGCGGGGAATTC
TCACACTGGTTCAGGGCAAAATTCTTCCAGCAGTACCGTTTGTTTTTCCGCTACAACCTGAAAAGCCGGATCATTATTTA
CGCCTGGGTGAATGATGATAAAGAATTACGCGCCTACGAAAGCAAAACAGACGCATACCGGATGTTTCGCAAGATGTTGA
AAAGCGGTGAACCGCCAGACAACTGGCAGGCACTTTGCGAGGCGTCTGGGAAGGTAGCGGCGGAAGAATTACCTTAG

Antitoxin


Download         Length: 115 a.a.        Molecular weight: 12701.48 Da        Isoelectric Point: 4.3324

>AT25094 WP_013573435.1 NC_015061:c88245-87901 [Rahnella sp. Y9602]
MSASALWGIKFEAESKVTRRFQTTIPATIRKALNLTENDRIQYKILPDGQVVISRQLEEAEDPVISAFLGFVAKDMLNNP
ENMQPVTLSLHEKINVLTAGMAIDLESPLSDDDE

Download         Length: 345 bp

>AT25094 NC_015061:c88245-87901 [Rahnella sp. Y9602]
ATGTCAGCCTCGGCACTATGGGGAATAAAATTCGAAGCCGAATCCAAAGTCACCCGCCGCTTCCAGACCACCATTCCGGC
CACTATCCGTAAGGCATTAAATCTCACCGAAAATGATCGGATCCAGTACAAGATTTTGCCAGACGGGCAGGTGGTTATTT
CGAGGCAACTCGAAGAAGCGGAAGACCCTGTTATCAGTGCTTTTCTCGGTTTTGTGGCAAAAGATATGCTCAATAACCCG
GAAAATATGCAGCCGGTAACATTATCCCTGCATGAAAAAATCAATGTACTGACCGCCGGGATGGCTATCGATCTTGAGAG
CCCGCTTTCTGACGATGACGAGTAA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
AlphaFold DBA0A0H3F9D7

Antitoxin

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Source
ID
Structure
AlphaFold DBA0A0H3F4N7

References