Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | yefM-yoeB (relBE)/YoeB-RelB |
Location | 2080138..2080657 | Replicon | chromosome |
Accession | NZ_CP100334 | ||
Organism | Streptococcus suis strain STC83 |
Toxin (Protein)
Gene name | yoeB | Uniprot ID | A0A0K2E7Z7 |
Locus tag | NKZ67_RS10380 | Protein ID | WP_013730620.1 |
Coordinates | 2080138..2080395 (-) | Length | 86 a.a. |
Antitoxin (Protein)
Gene name | yefM | Uniprot ID | A0A0K2E7Z9 |
Locus tag | NKZ67_RS10385 | Protein ID | WP_002939010.1 |
Coordinates | 2080397..2080657 (-) | Length | 87 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
NKZ67_RS10365 (NKZ67_10365) | 2076608..2078338 | - | 1731 | WP_024417308.1 | membrane protein | - |
NKZ67_RS10370 (NKZ67_10370) | 2078702..2079574 | - | 873 | WP_024393352.1 | 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA | - |
NKZ67_RS10375 (NKZ67_10375) | 2079594..2080124 | - | 531 | WP_009910909.1 | DUF1697 domain-containing protein | - |
NKZ67_RS10380 (NKZ67_10380) | 2080138..2080395 | - | 258 | WP_013730620.1 | Txe/YoeB family addiction module toxin | Toxin |
NKZ67_RS10385 (NKZ67_10385) | 2080397..2080657 | - | 261 | WP_002939010.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
NKZ67_RS10390 (NKZ67_10390) | 2080733..2081188 | - | 456 | WP_024417307.1 | 8-oxo-dGTP diphosphatase | - |
NKZ67_RS10395 (NKZ67_10395) | 2081193..2081561 | - | 369 | WP_024417306.1 | hypothetical protein | - |
NKZ67_RS10400 (NKZ67_10400) | 2081554..2082123 | - | 570 | WP_024417305.1 | ribonuclease M5 | - |
NKZ67_RS10405 (NKZ67_10405) | 2082107..2082889 | - | 783 | WP_024417304.1 | TatD family hydrolase | - |
NKZ67_RS10410 (NKZ67_10410) | 2082996..2083133 | - | 138 | WP_002939016.1 | 50S ribosomal protein L34 | - |
NKZ67_RS10415 (NKZ67_10415) | 2083301..2084296 | - | 996 | WP_013730624.1 | RNA-binding cell elongation regulator Jag/EloR | - |
NKZ67_RS10420 (NKZ67_10420) | 2084316..2085128 | - | 813 | WP_012027897.1 | YidC/Oxa1 family membrane protein insertase | - |
NKZ67_RS10425 (NKZ67_10425) | 2085112..2085471 | - | 360 | WP_004194560.1 | ribonuclease P protein component | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A0K2E7Z7 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A0K2E7Z9 |