Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) higBA (relBE)/HigB-HigA
Location 2519180..2519742 Replicon chromosome
Accession NZ_CP099907
Organism Escherichia albertii strain 112_1_EW_A

Toxin (Protein)


Gene name higB Uniprot ID L4J948
Locus tag NIY89_RS12485 Protein ID WP_000605676.1
Coordinates 2519180..2519458 (+) Length 93 a.a.

Antitoxin (Protein)


Gene name higA Uniprot ID -
Locus tag NIY89_RS12490 Protein ID WP_000781369.1
Coordinates 2519458..2519742 (+) Length 95 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NIY89_RS12465 (2515170) 2515170..2515601 - 432 WP_059225291.1 peroxiredoxin OsmC -
NIY89_RS12470 (2515859) 2515859..2515996 + 138 WP_000841563.1 stationary-phase-induced ribosome-associated protein -
NIY89_RS12475 (2516153) 2516153..2517850 + 1698 WP_059225292.1 malate dehydrogenase -
NIY89_RS12480 (2517984) 2517984..2518994 + 1011 WP_059225293.1 alcohol dehydrogenase AdhP -
NIY89_RS12485 (2519180) 2519180..2519458 + 279 WP_000605676.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
NIY89_RS12490 (2519458) 2519458..2519742 + 285 WP_000781369.1 HigA family addiction module antitoxin Antitoxin
NIY89_RS12495 (2519747) 2519747..2520223 - 477 WP_059225294.1 NUDIX domain-containing protein -
NIY89_RS12500 (2520296) 2520296..2520949 - 654 WP_256876185.1 formate dehydrogenase-N subunit gamma -
NIY89_RS12505 (2520942) 2520942..2521826 - 885 WP_001240583.1 formate dehydrogenase N subunit beta -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin HigB-1

(4-92)

Antitoxin

Toxin-antitoxin system, antidote protein, HigA

(3-81)


Sequences

Toxin        


Download         Length: 93 a.a.        Molecular weight: 10521.10 Da        Isoelectric Point: 7.3562

>T249900 WP_000605676.1 NZ_CP099907:2519180-2519458 [Escherichia albertii]
MIMNFRHKGLRDLFLLGKTSGVIPTQVKRLRHRLAVIDAASCLADIDMPGYRLHPLSGDRDGIWAISVSGNWRITFEFVN
GDAYILDYEDYH

Download         Length: 279 bp

Antitoxin


Download         Length: 95 a.a.        Molecular weight: 10371.06 Da        Isoelectric Point: 8.8567

>AT249900 WP_000781369.1 NZ_CP099907:2519458-2519742 [Escherichia albertii]
MKMANHPRPGDIIQESLDELNVSLREFARAMEIAPSTASRLLTGKAALTPEMAIKLSVVIGSSPQMWLNLQNAWSLAEAE
KTVDVSRLRRLVAQ

Download         Length: 285 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A829G6T1

Antitoxin

Source ID Structure

References