249131

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type I Classification (family/domain) ldrD-rdlD/Ldr(toxin)
Location 183360..183582 Replicon chromosome
Accession NZ_CP099588
Organism Escherichia coli strain EMG2

Toxin (Protein)


Gene name ldrD Uniprot ID S1E8T8
Locus tag NHF38_RS00875 Protein ID WP_000141634.1
Coordinates 183475..183582 (+) Length 36 a.a.

Antitoxin (RNA)


Gene name rdlD
Locus tag -
Coordinates 183360..183426 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NHF38_RS00855 178801..179703 + 903 WP_000084677.1 dipeptide ABC transporter permease DppC -
NHF38_RS00860 179714..180697 + 984 WP_001196486.1 dipeptide ABC transporter ATP-binding protein -
NHF38_RS00865 180694..181698 + 1005 WP_000107012.1 dipeptide ABC transporter ATP-binding subunit DppF -
NHF38_RS00870 181728..182999 - 1272 WP_001295225.1 aromatic amino acid transport family protein -
- 183360..183426 - 67 - - Antitoxin
NHF38_RS00875 183475..183582 + 108 WP_000141634.1 type I toxin-antitoxin system toxic polypeptide LdrD Toxin
NHF38_RS00880 183669..185348 - 1680 WP_000191622.1 cellulose biosynthesis protein BcsG -
NHF38_RS00885 185345..185536 - 192 WP_000988308.1 cellulose biosynthesis protein BcsF -
NHF38_RS00890 185533..187104 - 1572 WP_001204931.1 cellulose biosynthesis c-di-GMP-binding protein BcsE -
NHF38_RS00895 187377..187565 + 189 WP_001063318.1 cellulose biosynthesis protein BcsR -
NHF38_RS00900 187601..188329 + 729 WP_011310329.1 cellulose biosynthesis protein BcsQ -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Type I toxin-antitoxin system, toxin Ldr

(1-35)


Sequences

Toxin        


Download         Length: 36 a.a.        Molecular weight: 3916.72 Da        Isoelectric Point: 9.0157

>T249131 WP_000141634.1 NZ_CP099588:183475-183582 [Escherichia coli]
MTFAELGMAFWHDLAAPVIAGILASMIVNWLNKRK

Download         Length: 108 bp

Antitoxin


Download         Length: 67 bp

>AT249131 NZ_CP099588:c183426-183360 [Escherichia coli]
GTCTAGAGTCAAGATTAGCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTC

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 5LBJ

Antitoxin

Download structure file

References