Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | higBA (relBE)/Tad-HTH_31 |
Location | 83456..84060 | Replicon | chromosome |
Accession | NC_014125 | ||
Organism | Legionella pneumophila 2300/99 Alcoy |
Toxin (Protein)
Gene name | higB | Uniprot ID | A0A128WF47 |
Locus tag | LPA_RS00395 | Protein ID | WP_011212715.1 |
Coordinates | 83456..83779 (+) | Length | 108 a.a. |
Antitoxin (Protein)
Gene name | higA | Uniprot ID | - |
Locus tag | LPA_RS00400 | Protein ID | WP_011212716.1 |
Coordinates | 83776..84060 (+) | Length | 95 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
LPA_RS00370 | 78595..79899 | + | 1305 | WP_011945267.1 | ATP-grasp domain-containing protein | - |
LPA_RS00375 | 79920..80510 | + | 591 | WP_011945268.1 | alpha/beta hydrolase | - |
LPA_RS00380 | 80494..81441 | + | 948 | WP_011945269.1 | DMT family transporter | - |
LPA_RS00385 | 81541..81888 | + | 348 | Protein_74 | transposase family protein | - |
LPA_RS00390 | 82149..83372 | + | 1224 | WP_011945271.1 | site-specific integrase | - |
LPA_RS00395 | 83456..83779 | + | 324 | WP_011212715.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
LPA_RS00400 | 83776..84060 | + | 285 | WP_011212716.1 | helix-turn-helix domain-containing protein | Antitoxin |
LPA_RS00405 | 84242..85057 | + | 816 | WP_011945272.1 | hypothetical protein | - |
LPA_RS00410 | 85832..87244 | - | 1413 | WP_011945274.1 | hypothetical protein | - |
LPA_RS00415 | 87275..87883 | - | 609 | WP_011945275.1 | hypothetical protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | flank | IS/Tn | - | - | 81541..81918 | 377 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 108 a.a. Molecular weight: 12144.36 Da Isoelectric Point: 9.7878
>T24755 WP_011212715.1 NC_014125:83456-83779 [Legionella pneumophila 2300/99 Alcoy]
MSWIVEFYNESVEEAILTMPPKIQARMIKLLELIETHGANLGPPHTEAMGDGLFEIRAKAQEGIGRSLYCYMKGKHIVVL
HAFVKKSAKTPKPDLQLALKRKREVEK
MSWIVEFYNESVEEAILTMPPKIQARMIKLLELIETHGANLGPPHTEAMGDGLFEIRAKAQEGIGRSLYCYMKGKHIVVL
HAFVKKSAKTPKPDLQLALKRKREVEK
Download Length: 324 bp
>T24755 NC_014125:83456-83779 [Legionella pneumophila 2300/99 Alcoy]
ATGTCTTGGATTGTTGAATTTTATAATGAGTCTGTTGAAGAGGCCATACTTACAATGCCGCCAAAAATTCAGGCTCGAAT
GATTAAACTTTTGGAATTGATTGAAACACATGGCGCTAATCTTGGGCCTCCTCATACAGAAGCGATGGGTGATGGGTTAT
TTGAGATTCGCGCAAAAGCTCAAGAAGGAATCGGGCGATCGCTTTATTGCTATATGAAGGGAAAGCATATTGTGGTTTTG
CATGCATTTGTAAAGAAAAGTGCAAAAACTCCAAAACCAGATTTGCAATTAGCTCTCAAAAGAAAGCGGGAGGTAGAAAA
ATGA
ATGTCTTGGATTGTTGAATTTTATAATGAGTCTGTTGAAGAGGCCATACTTACAATGCCGCCAAAAATTCAGGCTCGAAT
GATTAAACTTTTGGAATTGATTGAAACACATGGCGCTAATCTTGGGCCTCCTCATACAGAAGCGATGGGTGATGGGTTAT
TTGAGATTCGCGCAAAAGCTCAAGAAGGAATCGGGCGATCGCTTTATTGCTATATGAAGGGAAAGCATATTGTGGTTTTG
CATGCATTTGTAAAGAAAAGTGCAAAAACTCCAAAACCAGATTTGCAATTAGCTCTCAAAAGAAAGCGGGAGGTAGAAAA
ATGA
Antitoxin
Download Length: 95 a.a. Molecular weight: 10488.22 Da Isoelectric Point: 9.8787
>AT24755 WP_011212716.1 NC_014125:83776-84060 [Legionella pneumophila 2300/99 Alcoy]
MMKLKTLKAKALKNPEVKEAYDALESEFALIDALLTMRQKAGLTQEELAERMGTKKGNISRLEKGNTNPSWNTLEKYAHA
CGFDISMAVKRIAS
MMKLKTLKAKALKNPEVKEAYDALESEFALIDALLTMRQKAGLTQEELAERMGTKKGNISRLEKGNTNPSWNTLEKYAHA
CGFDISMAVKRIAS
Download Length: 285 bp
>AT24755 NC_014125:83776-84060 [Legionella pneumophila 2300/99 Alcoy]
ATGATGAAACTTAAAACATTAAAGGCTAAAGCGTTAAAAAATCCTGAAGTAAAAGAAGCATACGATGCTTTGGAATCCGA
ATTTGCATTGATCGATGCGTTACTGACGATGCGTCAAAAAGCTGGATTAACTCAAGAAGAGTTAGCTGAGCGAATGGGGA
CAAAAAAAGGGAATATTTCTCGACTGGAAAAAGGAAATACTAATCCAAGCTGGAATACTTTAGAGAAATATGCACATGCG
TGTGGGTTTGATATTTCAATGGCAGTAAAGAGAATCGCTTCATAA
ATGATGAAACTTAAAACATTAAAGGCTAAAGCGTTAAAAAATCCTGAAGTAAAAGAAGCATACGATGCTTTGGAATCCGA
ATTTGCATTGATCGATGCGTTACTGACGATGCGTCAAAAAGCTGGATTAACTCAAGAAGAGTTAGCTGAGCGAATGGGGA
CAAAAAAAGGGAATATTTCTCGACTGGAAAAAGGAAATACTAATCCAAGCTGGAATACTTTAGAGAAATATGCACATGCG
TGTGGGTTTGATATTTCAATGGCAGTAAAGAGAATCGCTTCATAA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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