Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | yefM-yoeB (relBE)/Txe-RelB |
Location | 1821053..1821576 | Replicon | chromosome |
Accession | NZ_CP098255 | ||
Organism | Staphylococcus aureus strain N4 |
Toxin (Protein)
Gene name | yoeB | Uniprot ID | A0A2W3LFI1 |
Locus tag | NB630_RS08590 | Protein ID | WP_000074047.1 |
Coordinates | 1821310..1821576 (+) | Length | 89 a.a. |
Antitoxin (Protein)
Gene name | yefM | Uniprot ID | A0A2S6D1W5 |
Locus tag | NB630_RS08585 | Protein ID | WP_000587617.1 |
Coordinates | 1821053..1821310 (+) | Length | 86 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
NB630_RS08565 (NB630_08565) | 1816131..1817324 | + | 1194 | WP_000675407.1 | MFS transporter | - |
NB630_RS08570 (NB630_08570) | 1817548..1818297 | - | 750 | WP_000072447.1 | CPBP family lipoprotein N-acylation protein LnsB | - |
NB630_RS08575 (NB630_08575) | 1818493..1820070 | + | 1578 | WP_000143489.1 | FMN-binding glutamate synthase family protein | - |
NB630_RS08580 (NB630_08580) | 1820238..1820693 | - | 456 | WP_000732090.1 | YehR family lipoprotein | - |
NB630_RS08585 (NB630_08585) | 1821053..1821310 | + | 258 | WP_000587617.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
NB630_RS08590 (NB630_08590) | 1821310..1821576 | + | 267 | WP_000074047.1 | Txe/YoeB family addiction module toxin | Toxin |
NB630_RS08595 (NB630_08595) | 1821932..1823008 | + | 1077 | WP_001076679.1 | M42 family metallopeptidase | - |
NB630_RS08600 (NB630_08600) | 1823354..1824016 | + | 663 | WP_000923514.1 | ATP-binding cassette domain-containing protein | - |
NB630_RS08605 (NB630_08605) | 1824009..1824785 | + | 777 | WP_000072154.1 | iron export ABC transporter permease subunit FetB | - |
NB630_RS08610 (NB630_08610) | 1825179..1826366 | + | 1188 | WP_000026190.1 | MFS transporter | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A2W3LFI1 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A2S6D1W5 |