Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) higBA (relBE)/HigB-HigA
Location 4224540..4225267 Replicon chromosome
Accession NZ_CP098219
Organism Escherichia coli strain Z0117EC0013

Toxin (Protein)


Gene name higB Uniprot ID U9ZMR4
Locus tag NBY13_RS20310 Protein ID WP_000550189.1
Coordinates 4224953..4225267 (-) Length 105 a.a.

Antitoxin (Protein)


Gene name higA Uniprot ID -
Locus tag NBY13_RS20305 Protein ID WP_000560269.1
Coordinates 4224540..4224956 (-) Length 139 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NBY13_RS20295 (4219900) 4219900..4222251 + 2352 WP_000695431.1 alpha-glucosidase -
NBY13_RS20300 (4222477) 4222477..4224495 + 2019 WP_000121413.1 NADPH-dependent 2,4-dienoyl-CoA reductase -
NBY13_RS20305 (4224540) 4224540..4224956 - 417 WP_000560269.1 type II toxin-antitoxin system antitoxin HigA Antitoxin
NBY13_RS20310 (4224953) 4224953..4225267 - 315 WP_000550189.1 type II toxin-antitoxin system toxin HigB Toxin
NBY13_RS20315 (4225552) 4225552..4226688 - 1137 WP_000018703.1 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG -
NBY13_RS20320 (4226773) 4226773..4227276 + 504 WP_001295542.1 M48 family metallopeptidase -
NBY13_RS20325 (4227353) 4227353..4228045 + 693 WP_000942551.1 vancomycin high temperature exclusion protein -
NBY13_RS20330 (4228124) 4228124..4229110 + 987 WP_001385498.1 Gfo/Idh/MocA family oxidoreductase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, mRNA interferase HigB

(20-92)

Antitoxin

Cro/C1-type helix-turn-helix domain

(84-135)


Sequences

Toxin        


Download         Length: 105 a.a.        Molecular weight: 12103.10 Da        Isoelectric Point: 10.0409

>T247199 WP_000550189.1 NZ_CP098219:c4225267-4224953 [Escherichia coli]
MHLITQKALKDAAEKYPQHKTELVALGNTIAKGYFKKPESLKAVFPSLDNFKYLDKHYVFNVGGNELRVVAMVFFESQKC
YIREVMTHKEYDFFTAVHRTKGKK

Download         Length: 315 bp

Antitoxin


Download         Length: 139 a.a.        Molecular weight: 15023.47 Da        Isoelectric Point: 4.4547

>AT247199 WP_000560269.1 NZ_CP098219:c4224956-4224540 [Escherichia coli]
MIAIADILQAGEKLTAVAPFLAGIQNEEQYTQALELVDHLLLNDPENPLLDLVCAKITAWEESAPEFVEFNAMAQAMPGG
IAVIRTLMDQYGLTLSDLPEIGSKSMVSRVLSGKRKLTLEHAKKLATRFGISPALFID

Download         Length: 417 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 6KMQ
PDB 5IFG
PDB 5YCL
PDB 6KML

Antitoxin

Source ID Structure

References