Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type I Classification (family/domain) hok-sok/-
Location 909285..909543 Replicon chromosome
Accession NZ_CP098187
Organism Escherichia coli strain Z0117EC0117

Toxin (Protein)


Gene name hokC Uniprot ID S1NX00
Locus tag NBY25_RS04375 Protein ID WP_000809168.1
Coordinates 909285..909437 (-) Length 51 a.a.

Antitoxin (RNA)


Gene name sokC
Locus tag -
Coordinates 909486..909543 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NBY25_RS04355 904530..905243 - 714 WP_001102393.1 acidic protein MsyB -
NBY25_RS04360 905269..905673 - 405 WP_000843687.1 DUF2541 family protein -
NBY25_RS04365 906045..907961 + 1917 WP_000516135.1 molecular chaperone DnaK -
NBY25_RS04370 908050..909180 + 1131 WP_001118464.1 molecular chaperone DnaJ -
NBY25_RS04375 909285..909437 - 153 WP_000809168.1 type I toxin-antitoxin system toxin MokC Toxin
- 909486..909543 + 58 - - Antitoxin
NBY25_RS04380 910052..910813 + 762 WP_001274832.1 outer membrane protein OmpK -
NBY25_RS04385 910833..912326 + 1494 WP_001468392.1 sulfatase-like hydrolase/transferase -
NBY25_RS04390 912455..913714 + 1260 WP_000494928.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Hok/gef cell toxic protein

(6-47)


Sequences

Toxin        


Download         Length: 51 a.a.        Molecular weight: 5501.57 Da        Isoelectric Point: 7.1312

>T246885 WP_000809168.1 NZ_CP098187:c909437-909285 [Escherichia coli]
MKQHKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVFTAYESE

Download         Length: 153 bp

Antitoxin


Download         Length: 58 bp

>AT246885 NZ_CP098187:909486-909543 [Escherichia coli]
GTTCTGCATATAGGGGGCCTCGGGTTGATGGTAAAATATCACTCGGGGCTTTTCTCTA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB S1NX00

Antitoxin

Download structure file

References