Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | higBA (relBE)/HigB-HigA |
Location | 1777412..1777998 | Replicon | chromosome |
Accession | NZ_CP097529 | ||
Organism | Pseudomonas putida strain KT2440 isolate pSEVA631 |
Toxin (Protein)
Gene name | graT | Uniprot ID | Q88MI5 |
Locus tag | M8Z99_RS08255 | Protein ID | WP_010952670.1 |
Coordinates | 1777720..1777998 (-) | Length | 93 a.a. |
Antitoxin (Protein)
Gene name | graA | Uniprot ID | Q88MI6 |
Locus tag | M8Z99_RS08250 | Protein ID | WP_010952669.1 |
Coordinates | 1777412..1777711 (-) | Length | 100 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
M8Z99_RS08225 (M8Z99_08210) | 1772672..1774663 | + | 1992 | WP_010952665.1 | sialidase family protein | - |
M8Z99_RS08230 (M8Z99_08215) | 1774675..1775751 | + | 1077 | WP_010952666.1 | hypothetical protein | - |
M8Z99_RS08235 (M8Z99_08220) | 1775812..1776255 | + | 444 | WP_049587424.1 | structural protein P5 | - |
M8Z99_RS08240 (M8Z99_08225) | 1776252..1776752 | + | 501 | WP_010952668.1 | DUF2514 domain-containing protein | - |
M8Z99_RS08245 (M8Z99_08230) | 1776818..1777120 | + | 303 | WP_049587425.1 | hypothetical protein | - |
M8Z99_RS08250 (M8Z99_08235) | 1777412..1777711 | - | 300 | WP_010952669.1 | type II toxin-antitoxin system antitoxin GraA | Antitoxin |
M8Z99_RS08255 (M8Z99_08240) | 1777720..1777998 | - | 279 | WP_010952670.1 | type II toxin-antitoxin system toxin GraT | Toxin |
M8Z99_RS08260 (M8Z99_08245) | 1778249..1779895 | + | 1647 | WP_049587427.1 | Na+/H+ antiporter | - |
M8Z99_RS08265 (M8Z99_08250) | 1780001..1781197 | - | 1197 | WP_010952672.1 | succinyldiaminopimelate transaminase | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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