Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) pemK-chpS/PRK09812-ChpS
Location 5675444..5676021 Replicon chromosome
Accession NZ_CP097286
Organism Pseudomonas viridiflava strain JACO-C-5

Toxin (Protein)


Gene name pemK Uniprot ID -
Locus tag M4X66_RS25165 Protein ID WP_249583288.1
Coordinates 5675695..5676021 (+) Length 109 a.a.

Antitoxin (Protein)


Gene name chpS Uniprot ID -
Locus tag M4X66_RS25160 Protein ID WP_122445782.1
Coordinates 5675444..5675698 (+) Length 85 a.a.

Genomic Context

M4X66_RS25140M4X66_RS25145M4X66_RS25160M4X66_RS25165M4X66_RS25180M4X66_RS25150M4X66_RS25155M4X66_RS25170M4X66_RS25175
Location: 5670968..5672359 (1392 bp)
Type: Others
Protein ID: WP_249583286.1
Location: 5672457..5672858 (402 bp)
Type: Others
Protein ID: WP_057408846.1
Location: 5675444..5675698 (255 bp)
Type: Antitoxin
Protein ID: WP_122445782.1
Location: 5675695..5676021 (327 bp)
Type: Toxin
Protein ID: WP_249583288.1
Location: 5678431..5680428 (1998 bp)
Type: Others
Protein ID: WP_249583290.1
Location: 5673056..5673463 (408 bp)
Type: Others
Protein ID: WP_025995654.1
Location: 5673518..5675200 (1683 bp)
Type: Others
Protein ID: WP_249583287.1
Location: 5675966..5677156 (1191 bp)
Type: Others
Protein ID: WP_249583289.1
Location: 5677177..5678172 (996 bp)
Type: Others
Protein ID: WP_192020852.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
M4X66_RS251405670968..5672359+1392WP_249583286.1heavy metal sensor histidine kinase-
M4X66_RS251455672457..5672858+402WP_057408846.1MAPEG family protein-
M4X66_RS251505673056..5673463-408WP_025995654.1DUF1090 domain-containing protein-
M4X66_RS251555673518..5675200-1683WP_249583287.1NAD-dependent DNA ligase LigB-
M4X66_RS251605675444..5675698+255WP_122445782.1AbrB/MazE/SpoVT family DNA-binding domain-containing proteinAntitoxin
M4X66_RS251655675695..5676021+327WP_249583288.1type II toxin-antitoxin system PemK/MazF family toxinToxin
M4X66_RS251705675966..5677156-1191WP_249583289.1methionine adenosyltransferase-
M4X66_RS251755677177..5678172-996WP_192020852.1metalloregulator ArsR/SmtB family transcription factor-
M4X66_RS251805678431..5680428+1998WP_249583290.1transketolase-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

mRNA interferase PemK-like

(8-74)

Antitoxin

SpoVT-AbrB domain

(6-48)


Sequences

Toxin        


Download         Length: 109 a.a.        Molecular weight: 11885.55 Da        Isoelectric Point: 12.5044

>T245101 WP_249583288.1 NZ_CP097286:5675695-5676021 [Pseudomonas viridiflava]
VKQHGFNRADIVRISLNPTAGREQQRDFRPALVLTPAAYNVSGLAIVAPIIQGGDFARYSGFAVPLGGSGVPNKSPRRLT
SPGAFDDRRRITGRQQRAGRRRGRFFPR

Download         Length: 327 bp

Antitoxin


Download         Length: 85 a.a.        Molecular weight: 9219.65 Da        Isoelectric Point: 4.6471

>AT245101 WP_122445782.1 NZ_CP097286:5675444-5675698 [Pseudomonas viridiflava]
MEVKIQQWGNSAAIRLPANVLKQMSLVSGDVLVLDVSSEVMTLRPAKARLHYQLADLMAQCDLNASEPEELAGWNAMQPI
GREA

Download         Length: 255 bp


Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References