Detailed information of TA system TA242820

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): higBA (relBE)/COG4683-HTH_37
• Location: 13609..14266
• Replicon: plasmid pJNE2-NDM
• Accession: NZ_CP096170
• Organism: Shewanella sp. JNE2

Toxin (Protein)

• Gene name: higB
• Uniprot ID: U3PDC3
• Locus tag: MZ182_RS20465
• Protein ID: WP_000270043.1
• Coordinates: 13916..14266 (-)
• Length: 117 a.a.

Antitoxin (Protein)

• Gene name: higA
• Uniprot ID: -
• Locus tag: MZ182_RS20460
• Protein ID: WP_000124640.1
• Coordinates: 13609..13911 (-)
• Length: 101 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
MZ182_RS20415 (MZ182_20415)	9234..9662	+	429	WP_000591074.1	hypothetical protein	-
MZ182_RS20420 (MZ182_20420)	9719..10078	+	360	WP_000422768.1	hypothetical protein	-
MZ182_RS20425 (MZ182_20425)	10078..10524	+	447	WP_000919345.1	Fe3+-siderophore ABC transporter permease	-
MZ182_RS20430 (MZ182_20430)	10521..11039	+	519	WP_000210756.1	nitrite reductase	-
MZ182_RS20435 (MZ182_20435)	11039..11269	+	231	WP_000972663.1	hypothetical protein	-
MZ182_RS20440 (MZ182_20440)	11256..12113	+	858	WP_001167032.1	hypothetical protein	-
MZ182_RS20445 (MZ182_20445)	12344..12871	+	528	WP_001236377.1	thermonuclease family protein	-
MZ182_RS20450 (MZ182_20450)	12929..13201	+	273	WP_001043047.1	HU family DNA-binding protein	-
MZ182_RS20455 (MZ182_20455)	13289..13582	+	294	WP_001239997.1	chromosome segregation protein ParM	-
MZ182_RS20460 (MZ182_20460)	13609..13911	-	303	WP_000124640.1	XRE family transcriptional regulator	Antitoxin
MZ182_RS20465 (MZ182_20465)	13916..14266	-	351	WP_000270043.1	type II toxin-antitoxin system RelE/ParE family toxin	Toxin
MZ182_RS20470 (MZ182_20470)	14429..14977	+	549	WP_001061574.1	transcriptional regulator	-
MZ182_RS20475 (MZ182_20475)	15318..15512	+	195	WP_000343597.1	hypothetical protein	-
MZ182_RS20480 (MZ182_20480)	15523..15894	+	372	WP_000516916.1	hypothetical protein	-
MZ182_RS20485 (MZ182_20485)	15887..16357	+	471	WP_001281821.1	hypothetical protein	-
MZ182_RS20490 (MZ182_20490)	16372..16707	-	336	WP_000683476.1	hypothetical protein	-
MZ182_RS20495 (MZ182_20495)	16804..17292	+	489	WP_001273096.1	DUF1643 domain-containing protein	-
MZ182_RS20500 (MZ182_20500)	17295..17792	+	498	WP_000062185.1	hypothetical protein	-
MZ182_RS20505 (MZ182_20505)	18007..18711	-	705	WP_001067855.1	IS6-like element IS26 family transposase	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)
	-	inside	Conjugative plasmid	aac(3)-IId / aadA5 / qacE / sul1 / blaNDM-1 / ARR-3 / mph(A) / aph(3')-Ia / aph(6)-Id / aph(3'')-Ib / sul2	-	1..152348	152348

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Toxin HigB-like (12-106)

Antitoxin

• Cro/C1-type helix-turn-helix domain (33-79)

Sequences

Toxin

Protein

• Length: 117 a.a.
• Molecular weight: 13328.21 Da
• Isoelectric Point: 5.2421

>T242820 WP_000270043.1 NZ_CP096170:c14266-13916 [Shewanella sp. JNE2]
MWVIETTDTFDEWFDALDDTDRANVLASMMVLRDRGPMLSRPYADTVNGSSYSNMKELRVQSKGDPIRAFFAFDPKRKGI
LLCAGNKTGDEKRFYEVMIPIADREFAAHLDKLKKE

Nucleotide

• Length: 351 bp

>T242820 NZ_OW967796:94163-94561 [Escherichia coli]
ATGCTGAAGTTTATGCTCGATACCAACATCTGCATTTTTACGATAAAGAACAAACCCGCCAGTGTCAGGGAACGTTTTAA
CCTGAACCAGGGGAGAATGTGCATCAGTTCGGTCACTCTGATGGAGCTGATATATGGTGCAGAAAAAAGCCAGATGCCTG
AGCGTAATCTCGCTGTGATCGAGGGATTTGTTTCCCGCATTGACGTTCTGGATTACGACGCTGCTGCTGCCACACACACC
GGCCAGATAAGAGCAGAACTTGCCCGTCAGGGACGCCCTGTCGGGCCATTTGATCAAATGATCGCAGGTCATGCCCGCAG
TCGGGGACTGATTATTGTGACTAATAACACCCGGGAATTTGAACGTGTGGGCGGCCTGAGAATTGAAGACTGGAGTTGA

Antitoxin

Protein

• Length: 101 a.a.
• Molecular weight: 11006.73 Da
• Isoelectric Point: 7.2036

>AT242820 WP_000124640.1 NZ_CP096170:c13911-13609 [Shewanella sp. JNE2]
MARTLDQMLATEKPEVVAKAQKAATEMLLNIHLAELRDRMNLTQGEIAASLGVRQPTVSEMEKPGRDLKLSSIKRYVEAS
GGKLRLDVELPDGTHYGFAV

Nucleotide

• Length: 303 bp

>AT242820 NZ_OW967796:93936-94163 [Escherichia coli]
ATGGAAACCACCGTATTTCTCAGCAACCGCAGCCAGGCGGTCAGACTGCCAAAAGCGGTTGCATTGCCGGAAAACGTAAA
ACGCGTTGAAGTGATTGCTGTCGGACGAACCCGAATCATTACGCCTGCCGGAGAGACATGGGACGAATGGTTCGACGGAA
ACAGTGTCAGCGCTGATTTTATGGATAACAGGGAACAGCCTGGTATGCAGGAAAGGGAGTCATTCTGA

Structures

Toxin

• AlphaFold DB: A0A7G8AFB9