240921

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) higBA (relBE)/COG4683-HTH_37
Location 40526..41176 Replicon chromosome
Accession NZ_CP094999
Organism Klebsiella michiganensis strain fxq

Toxin (Protein)


Gene name higB Uniprot ID A0A0H3H3K0
Locus tag MT472_RS00195 Protein ID WP_014227314.1
Coordinates 40526..40867 (+) Length 114 a.a.

Antitoxin (Protein)


Gene name higA Uniprot ID A0A0H3H3Q5
Locus tag MT472_RS00200 Protein ID WP_014227313.1
Coordinates 40877..41176 (+) Length 100 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
MT472_RS00180 (MT472_00180) 36518..37837 + 1320 WP_032751824.1 MFS transporter -
MT472_RS00185 (MT472_00185) 37983..39374 + 1392 WP_004107098.1 hexose-6-phosphate:phosphate antiporter -
MT472_RS00190 (MT472_00190) 39823..40275 + 453 WP_032718748.1 DUF1198 domain-containing protein -
MT472_RS00195 (MT472_00195) 40526..40867 + 342 WP_014227314.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
MT472_RS00200 (MT472_00200) 40877..41176 + 300 WP_014227313.1 helix-turn-helix transcriptional regulator Antitoxin
MT472_RS00205 (MT472_00205) 41295..42476 + 1182 WP_014227312.1 purine ribonucleoside efflux pump NepI -
MT472_RS00210 (MT472_00210) 42509..43318 - 810 WP_004855618.1 phosphonoacetaldehyde hydrolase -
MT472_RS00215 (MT472_00215) 43328..44431 - 1104 WP_244673302.1 2-aminoethylphosphonate--pyruvate transaminase -
MT472_RS00220 (MT472_00220) 44572..45291 + 720 WP_042946139.1 phosphonate utilization transcriptional regulator PhnR -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin HigB-like

(12-107)

Antitoxin

Cro/C1-type helix-turn-helix domain

(31-84)


Sequences

Toxin        


Download         Length: 114 a.a.        Molecular weight: 13110.00 Da        Isoelectric Point: 5.7545

>T240921 WP_014227314.1 NZ_CP094999:40526-40867 [Klebsiella michiganensis]
MWDVETTEVFDKWFEAQTEALKEDMLAAMVILSEYGPRLGRPFADTVNDSAFSNMKELRIQHQGRPIRAFFVFDPSRCGI
VLCAGDKTGLNEKRFYKDMIKLADAEYRKHLNQ

Download         Length: 342 bp

>T240921 NZ_LT859959:c6105113-6104820 [Bradyrhizobium sp. ORS 285]
ATGGTCGAAATCCGGCAAACGGCCGAGTTCAAGGCGTGGCTGCTCGGCCTGCGCGATCTGAAGGCAAAAGCCAGGATCGC
CGCGCGGATCGAGCGGGCCGCGAATGGCAATCTCGGCGACAGCAAGCCGGTCGGCGAGGGCGTCTCCGAGATGCGGATCG
ATTACGGCCCGGGCTACCGGATCTACTATCGGCAGCGTGGAGACGTCCTGGTCATCCTGCTCTGTGGTGGCGACAAGAGC
ACGCAACAGTCGGACATCCGGCGCGCCCAGGCACTGGCGAAGAGAGAGGCATAG

Antitoxin


Download         Length: 100 a.a.        Molecular weight: 10966.87 Da        Isoelectric Point: 9.7256

>AT240921 WP_014227313.1 NZ_CP094999:40877-41176 [Klebsiella michiganensis]
MATLKELMAKQSPESQARIAEKVEEMRQAIALSMLREELNMSQAELAKAMGVKQPTIAKMEQADNDPRLSTLKRYVAALG
GELSIDVKLPTGKRIAFHL

Download         Length: 300 bp

>AT240921 NZ_LT859959:c6104816-6104475 [Bradyrhizobium sp. ORS 285]
ATGGCAACGACACGCTTCGACGCGGCGGAATACCTGGCGGAGCCGGAGGCACAGGCCGAGTTTCTGGCGGCGGCGCTCGA
GGATGGCACCGCGGATGAGATCCGCGCCGCGATCAACACCATCGCGCGGGCGCGCGGCATGTCGGACCTCGCGAAGGCGA
CCGGCATCCGTCGCGAGCAGCTTTATCGGGCGCTGGGCGAGGACGGGAATCCGGAGTTTGCCACCATCCTGACCGTGCTC
CGTGCGCTCGGGGTGAAGCTGACGTCGGCGCCGGCGAAGGGGGCGTCAAAGGCGGCTCCGAAGCGGAAGACGGCGAAGAA
GGTTGGGCGGCGCGCTGCGTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0H3H3K0

Antitoxin

Source ID Structure
AlphaFold DB A0A0H3H3Q5

References