Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yefM-yoeB (relBE)/Txe-RelB
Location 2633047..2633570 Replicon chromosome
Accession NZ_CP094791
Organism Staphylococcus aureus strain IVB6166

Toxin (Protein)


Gene name yoeB Uniprot ID A0A2W3LFI1
Locus tag MUA80_RS13375 Protein ID WP_000074047.1
Coordinates 2633047..2633313 (-) Length 89 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID A0A2S6D1W5
Locus tag MUA80_RS13380 Protein ID WP_000587617.1
Coordinates 2633313..2633570 (-) Length 86 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
MUA80_RS13355 (MUA80_13330) 2628257..2629444 - 1188 WP_000026190.1 MFS transporter -
MUA80_RS13360 (MUA80_13335) 2629838..2630614 - 777 WP_000072154.1 iron export ABC transporter permease subunit FetB -
MUA80_RS13365 (MUA80_13340) 2630607..2631269 - 663 WP_000923514.1 ATP-binding cassette domain-containing protein -
MUA80_RS13370 (MUA80_13345) 2631615..2632691 - 1077 WP_001076679.1 M42 family metallopeptidase -
MUA80_RS13375 (MUA80_13350) 2633047..2633313 - 267 WP_000074047.1 Txe/YoeB family addiction module toxin Toxin
MUA80_RS13380 (MUA80_13355) 2633313..2633570 - 258 WP_000587617.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
MUA80_RS13385 (MUA80_13360) 2633930..2634385 + 456 WP_000732090.1 YehR family lipoprotein -
MUA80_RS13390 (MUA80_13365) 2634553..2636130 - 1578 WP_000143489.1 FMN-binding glutamate synthase family protein -
MUA80_RS13395 (MUA80_13370) 2636326..2637075 + 750 WP_000072447.1 CPBP family lipoprotein N-acylation protein LnsB -
MUA80_RS13400 (MUA80_13375) 2637299..2638492 - 1194 WP_000675407.1 MFS transporter -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(4-87)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-68)


Sequences

Toxin        


Download         Length: 89 a.a.        Molecular weight: 10662.26 Da        Isoelectric Point: 10.1384

>T240460 WP_000074047.1 NZ_CP094791:c2633313-2633047 [Staphylococcus aureus]
MSNYTVKIKNSAKSDLKKIKHSYLKKSFLEIVETLKNDPYKITQSFEKLEPKYLERYSRRINHQHRIVYTVDDRNKEVLI
LSAWSHYD

Download         Length: 267 bp

>T240460 NZ_LT009690:c2172755-2172546 [Staphylococcus aureus]
ATGATACATCAAAATACGATTTACACAGCGGGAATTGAAACAGAAGAACAAGTAAGTCAATTGACAGAACGCATTTCAAA
TATGATAGGTGTTCATCAAGTGAATATTAATATAATAGATGGTCAAGTAACTGTATCGTATGAGACACCAGCAAATTTGA
ATAGTATTGAAAAAGAAATCTATGATGAAGGATACAAAATTGTATTTTAG

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 9747.71 Da        Isoelectric Point: 4.1353

>AT240460 WP_000587617.1 NZ_CP094791:c2633570-2633313 [Staphylococcus aureus]
MIITSPTEARKDFYQLLKNVNNNHEPIYISGNNAENNAVIIGLEDWKSIQETIYLESTGTMDKVREREKDSSGTTNIDDI
DWDNL

Download         Length: 258 bp

>AT240460 NZ_LT009690:c2173060-2172767 [Staphylococcus aureus]
ATGACTGAACAAGATAATGCACATCATTCTGAACAAATAAAAACGAATCTTAAATCACGTTTAAATCGAATTGAAGGACA
AGTGAGAGCGATTAATCGCATGATTGAAGAAGATGTCTATTGTGATGATGTCCTTACGCAAATAAGAGCGACACGTTCGG
CGTTAAACAGTGTTGCGATAAAGTTATTAGAACAACATATGAAAAGTTGTATTATGAATAAAGTTAATCAAGGTGCTCAG
GAAGAGGCAATGGAAGAGTTATTAGTGACTTTTCAAAAATTGATTAAAGACTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A2W3LFI1

Antitoxin

Source ID Structure
AlphaFold DB A0A2S6D1W5

References