Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | yefM-yoeB (relBE)/Txe-RelB |
| Location | 2497715..2498232 | Replicon | chromosome |
| Accession | NZ_CP093930 | ||
| Organism | Staphylococcus aureus strain WA121-2010_15611 | ||
Toxin (Protein)
| Gene name | yoeB | Uniprot ID | A0A3A3ATA4 |
| Locus tag | MPM52_RS12630 | Protein ID | WP_000113265.1 |
| Coordinates | 2497715..2497981 (-) | Length | 89 a.a. |
Antitoxin (Protein)
| Gene name | yefM | Uniprot ID | T1YB60 |
| Locus tag | MPM52_RS12635 | Protein ID | WP_000584499.1 |
| Coordinates | 2497981..2498232 (-) | Length | 84 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPM52_RS12600 (2493143) | 2493143..2493679 | - | 537 | WP_000169317.1 | GNAT family N-acetyltransferase | - |
| MPM52_RS12605 (2493913) | 2493913..2494737 | - | 825 | WP_000572038.1 | formate/nitrite transporter family protein | - |
| MPM52_RS12610 (2494954) | 2494954..2495136 | - | 183 | WP_000230292.1 | hypothetical protein | - |
| MPM52_RS12615 (2495220) | 2495220..2495687 | - | 468 | WP_000153347.1 | SRPBCC domain-containing protein | - |
| MPM52_RS12620 (2495873) | 2495873..2497420 | - | 1548 | WP_000727756.1 | zinc ABC transporter substrate-binding lipoprotein AdcA | - |
| MPM52_RS12625 (2497609) | 2497609..2497680 | - | 72 | Protein_2443 | hypothetical protein | - |
| MPM52_RS12630 (2497715) | 2497715..2497981 | - | 267 | WP_000113265.1 | Txe/YoeB family addiction module toxin | Toxin |
| MPM52_RS12635 (2497981) | 2497981..2498232 | - | 252 | WP_000584499.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
| MPM52_RS12640 (2498397) | 2498397..2498477 | - | 81 | WP_223197974.1 | hypothetical protein | - |
| MPM52_RS12645 (2498505) | 2498505..2499104 | - | 600 | WP_000162810.1 | DsbA family protein | - |
| MPM52_RS12650 (2499123) | 2499123..2499485 | - | 363 | WP_000819843.1 | DUF4467 domain-containing protein | - |
| MPM52_RS12655 (2499740) | 2499740..2500990 | + | 1251 | WP_001012225.1 | FemA/FemB family glycyltransferase FmhA | - |
| MPM52_RS12660 (2501087) | 2501087..2501818 | - | 732 | WP_000615461.1 | amino acid ABC transporter ATP-binding protein | - |
| MPM52_RS12665 (2501815) | 2501815..2502534 | - | 720 | WP_000479576.1 | amino acid ABC transporter permease | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 89 a.a. Molecular weight: 10436.96 Da Isoelectric Point: 10.0573
>T239080 WP_000113265.1 NZ_CP093930:c2497981-2497715 [Staphylococcus aureus]
MARLNITFSPQAFEDYKYFQQNNKKMVKKINELLKSIDRNGALEGIGKPEKLKSNLTGYYSRRINHEHRLVYTVDDNHIK
IASCKYHY
MARLNITFSPQAFEDYKYFQQNNKKMVKKINELLKSIDRNGALEGIGKPEKLKSNLTGYYSRRINHEHRLVYTVDDNHIK
IASCKYHY
Download Length: 267 bp
>T239080 NZ_CP093930:c2497981-2497715 [Staphylococcus aureus]
ATGGCTAGGTTAAATATTACGTTTTCGCCTCAAGCCTTTGAAGATTATAAGTATTTTCAGCAGAACAATAAAAAAATGGT
GAAGAAGATTAATGAGTTACTTAAAAGTATTGACAGAAATGGTGCATTGGAAGGTATAGGTAAGCCTGAAAAGTTAAAAT
CGAATCTGACTGGGTATTATAGTAGACGTATCAATCACGAACATAGATTGGTTTATACAGTAGATGACAATCATATAAAA
ATAGCATCATGTAAATACCATTATTAA
ATGGCTAGGTTAAATATTACGTTTTCGCCTCAAGCCTTTGAAGATTATAAGTATTTTCAGCAGAACAATAAAAAAATGGT
GAAGAAGATTAATGAGTTACTTAAAAGTATTGACAGAAATGGTGCATTGGAAGGTATAGGTAAGCCTGAAAAGTTAAAAT
CGAATCTGACTGGGTATTATAGTAGACGTATCAATCACGAACATAGATTGGTTTATACAGTAGATGACAATCATATAAAA
ATAGCATCATGTAAATACCATTATTAA
Antitoxin
Download Length: 84 a.a. Molecular weight: 9433.60 Da Isoelectric Point: 4.3407
>AT239080 WP_000584499.1 NZ_CP093930:c2498232-2497981 [Staphylococcus aureus]
MIIKNYSYARQNLKALMTKVNDDSDMVTVTSTDDKNVVIMSESDYNSMMETLYLQQNPNNAEHLAQSIADLERGKTITKD
IDV
MIIKNYSYARQNLKALMTKVNDDSDMVTVTSTDDKNVVIMSESDYNSMMETLYLQQNPNNAEHLAQSIADLERGKTITKD
IDV
Download Length: 252 bp
>AT239080 NZ_CP093930:c2498232-2497981 [Staphylococcus aureus]
ATGATTATTAAAAATTATTCATACGCTCGACAGAATTTAAAGGCACTTATGACAAAAGTAAATGATGATAGTGATATGGT
AACTGTAACATCTACTGATGATAAAAACGTAGTAATCATGTCAGAATCAGATTATAACTCCATGATGGAAACACTTTACC
TCCAACAGAACCCAAATAATGCTGAACACTTAGCTCAATCAATTGCAGATCTAGAACGTGGGAAAACTATAACGAAAGAT
ATAGATGTATAA
ATGATTATTAAAAATTATTCATACGCTCGACAGAATTTAAAGGCACTTATGACAAAAGTAAATGATGATAGTGATATGGT
AACTGTAACATCTACTGATGATAAAAACGTAGTAATCATGTCAGAATCAGATTATAACTCCATGATGGAAACACTTTACC
TCCAACAGAACCCAAATAATGCTGAACACTTAGCTCAATCAATTGCAGATCTAGAACGTGGGAAAACTATAACGAAAGAT
ATAGATGTATAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|