Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type II Classification (family/domain) higBA (relBE)/HigB-HigA
Location 4661061..4661815 Replicon chromosome
Accession NZ_CP093400
Organism Salmonella enterica subsp. enterica serovar Infantis strain R21.1147

Toxin (Protein)


Gene name higB Uniprot ID B5F003
Locus tag MOP59_RS22730 Protein ID WP_000558166.1
Coordinates 4661061..4661372 (+) Length 104 a.a.

Antitoxin (Protein)


Gene name higA Uniprot ID -
Locus tag MOP59_RS22735 Protein ID WP_001259011.1
Coordinates 4661369..4661815 (+) Length 149 a.a.

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
MOP59_RS22700 (4656719) 4656719..4657621 + 903 WP_000331361.1 formate dehydrogenase subunit beta -
MOP59_RS22705 (4657618) 4657618..4658253 + 636 WP_000829025.1 formate dehydrogenase cytochrome b556 subunit -
MOP59_RS22710 (4658250) 4658250..4659179 + 930 WP_000027730.1 formate dehydrogenase accessory protein FdhE -
MOP59_RS22715 (4659226) 4659226..4659516 - 291 WP_000362050.1 DNA-binding transcriptional regulator -
MOP59_RS22720 (4659517) 4659517..4659828 - 312 WP_001159630.1 cytotoxic translational repressor of toxin-antitoxin stability system -
MOP59_RS22725 (4660046) 4660046..4660975 + 930 WP_021294279.1 alpha/beta hydrolase -
MOP59_RS22730 (4661061) 4661061..4661372 + 312 WP_000558166.1 type II toxin-antitoxin system HigB family toxin Toxin
MOP59_RS22735 (4661369) 4661369..4661815 + 447 WP_001259011.1 type II toxin-antitoxin system HigA family antitoxin Antitoxin
MOP59_RS22740 (4661830) 4661830..4662771 - 942 WP_001518251.1 fatty acid biosynthesis protein FabY -
MOP59_RS22745 (4662816) 4662816..4663253 - 438 WP_023993693.1 D-aminoacyl-tRNA deacylase -
MOP59_RS22750 (4663250) 4663250..4664122 - 873 WP_000921423.1 virulence factor BrkB family protein -
MOP59_RS22755 (4664116) 4664116..4664715 - 600 WP_000965698.1 glucose-1-phosphatase -
MOP59_RS22760 (4664906) 4664906..4665709 - 804 WP_000059693.1 DeoR/GlpR family DNA-binding transcription regulator -
MOP59_RS22765 (4665743) 4665743..4666639 - 897 WP_001520529.1 sugar kinase -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.



Sequences


Toxin        


Download         Length: 104 a.a.        Molecular weight: 12432.40 Da        Isoelectric Point: 9.5334

>T238464 WP_000558166.1 NZ_CP093400:4661061-4661372 [Salmonella enterica subsp. enterica serovar Infantis]
VHVISRKPFNEAMLMYPNHELALTELLNVLEKKTFTQPEEMKRYIPSLDNFKYRDKWWVIDVSGNSLRLISYIDFRLHKI
FVKHIVSHAEYDKLTAYYRGNKE

Download         Length: 312 bp

>T238464 NZ_LR890356:c4882075-4881791 [Klebsiella pneumoniae]
ATGACCTATGAACTGGAGTTTGATCCACGAGCCTGGCGCGAATGGCAGAAGCCTGGCGAGACGGTCAAAAAACAGTTCAA
AAATAAGCTCCAGCAGATTATGCAGAATCTGCGAATTGAGTCGGCCAGGCTGAGCGATTTACCGGATTGCTACAAAATCA
AGCTTAAGGCGTCAGGTTATCGGTTGGTGTATCAAGTACGAGATAGTGTGGTGGTGGTTTACGTTATTGCCATTGGCAAA
AGAGAGAAAGCGGCCGTTTATCATCAGGCGAATAAACGGCTCTAA

Antitoxin


Download         Length: 149 a.a.        Molecular weight: 16734.08 Da        Isoelectric Point: 6.6451

>AT238464 WP_001259011.1 NZ_CP093400:4661369-4661815 [Salmonella enterica subsp. enterica serovar Infantis]
MRTHRQMDATSAKKIVDTFSDAVKTVPLMGEDRNDNEYRRALALVEFLVDHDDLENPLFELLCARISEYEKHAPEFKALN
QHLEKTPPGVSVLRTLMDQYGLKAADLANELGSKSNVSNILNGRRALTVNHIKALTQRFKLPADAFIE

Download         Length: 447 bp

>AT238464 NZ_LR890356:c4882307-4882065 [Klebsiella pneumoniae]
ATGGCCACGCTCAATGTTCGACTGGACGATAAACTCAAAAAAGAGGCTTATGCCGTGCTGGAGAAACTCGATATGACACC
AACGGAGGCGGTACGCCTGCTGTTTCAATACATTGCGGAAAATGGCCGCATGCCGGTGAAAAGTATGACCATCAGTGATG
GCGAAGCGGCGTTATTACGCACCGTTCGCGAACGGCTGGAAAACCCACGGCCGGGGGTTAAGGTGAGTCTGGATGACCTA
TGA

Similar Proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures


Toxin

Source ID Structure
AlphaFold DB A0A0R9ME90


Antitoxin

Source ID Structure

References