Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | yefM-yoeB (relBE)/Txe-RelB |
| Location | 2442185..2442702 | Replicon | chromosome |
| Accession | NZ_CP092538 | ||
| Organism | Staphylococcus aureus strain VMRSA-WC123 | ||
Toxin (Protein)
| Gene name | yoeB | Uniprot ID | A0A3A3ATA4 |
| Locus tag | MKI57_RS12220 | Protein ID | WP_000113265.1 |
| Coordinates | 2442185..2442451 (-) | Length | 89 a.a. |
Antitoxin (Protein)
| Gene name | yefM | Uniprot ID | T1YB60 |
| Locus tag | MKI57_RS12225 | Protein ID | WP_000584499.1 |
| Coordinates | 2442451..2442702 (-) | Length | 84 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MKI57_RS12190 (MKI57_002416) | 2437613..2438149 | - | 537 | WP_000169317.1 | GNAT family N-acetyltransferase | - |
| MKI57_RS12195 (MKI57_002417) | 2438383..2439207 | - | 825 | WP_000572038.1 | formate/nitrite transporter family protein | - |
| MKI57_RS12200 (MKI57_002418) | 2439424..2439606 | - | 183 | WP_000230292.1 | hypothetical protein | - |
| MKI57_RS12205 (MKI57_002419) | 2439690..2440157 | - | 468 | WP_000153347.1 | SRPBCC domain-containing protein | - |
| MKI57_RS12210 (MKI57_002420) | 2440343..2441890 | - | 1548 | WP_000727772.1 | zinc ABC transporter substrate-binding lipoprotein AdcA | - |
| MKI57_RS12215 (MKI57_002421) | 2442079..2442150 | - | 72 | Protein_2365 | hypothetical protein | - |
| MKI57_RS12220 (MKI57_002422) | 2442185..2442451 | - | 267 | WP_000113265.1 | Txe/YoeB family addiction module toxin | Toxin |
| MKI57_RS12225 (MKI57_002423) | 2442451..2442702 | - | 252 | WP_000584499.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
| MKI57_RS12230 (MKI57_002424) | 2442867..2442947 | - | 81 | WP_223197974.1 | hypothetical protein | - |
| MKI57_RS12235 (MKI57_002425) | 2442975..2443574 | - | 600 | WP_000162810.1 | DsbA family protein | - |
| MKI57_RS12240 (MKI57_002426) | 2443593..2443955 | - | 363 | WP_000819843.1 | DUF4467 domain-containing protein | - |
| MKI57_RS12245 (MKI57_002427) | 2444210..2445460 | + | 1251 | WP_001012225.1 | FemA/FemB family glycyltransferase FmhA | - |
| MKI57_RS12250 (MKI57_002428) | 2445557..2446288 | - | 732 | WP_000615461.1 | amino acid ABC transporter ATP-binding protein | - |
| MKI57_RS12255 (MKI57_002429) | 2446285..2447004 | - | 720 | WP_000479576.1 | amino acid ABC transporter permease | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 89 a.a. Molecular weight: 10436.96 Da Isoelectric Point: 10.0573
>T236479 WP_000113265.1 NZ_CP092538:c2442451-2442185 [Staphylococcus aureus]
MARLNITFSPQAFEDYKYFQQNNKKMVKKINELLKSIDRNGALEGIGKPEKLKSNLTGYYSRRINHEHRLVYTVDDNHIK
IASCKYHY
MARLNITFSPQAFEDYKYFQQNNKKMVKKINELLKSIDRNGALEGIGKPEKLKSNLTGYYSRRINHEHRLVYTVDDNHIK
IASCKYHY
Download Length: 267 bp
>T236479 NZ_LR594675:c1984904-1984533 [Variovorax sp. PBS-H4]
ATGATCCTCGTTGACACGTCGGTATGGATCGACCACCTGGCCCGGGGCGATTCAAGATTGCAATCGCTGCTGGAGGAAGG
TGAAGTCCTCATGCATCCATACATCGTCGCGGAGATTGCTTTGGGCAGCCTGACTCGGCGAAAAGAGACCGTCGGCGCGT
TGCAGGCCTTGCCCGAGATTCCGGCGGCGCGCCATGACGAGGTCATGGCGTTCCTTGGCAACGAGCGCTTGTTCGGCCTC
GGGATCGGCTATGTCGATCTTCACTTGCTTGCCGCGACTCGCCTCGCCGTTGGCACGAAGCTATGGACACGCGATCGACG
CCTTCTTCAAGCGGCACTGAAATTTAACCTGGCTGCGTTCGCCGCACATTGA
ATGATCCTCGTTGACACGTCGGTATGGATCGACCACCTGGCCCGGGGCGATTCAAGATTGCAATCGCTGCTGGAGGAAGG
TGAAGTCCTCATGCATCCATACATCGTCGCGGAGATTGCTTTGGGCAGCCTGACTCGGCGAAAAGAGACCGTCGGCGCGT
TGCAGGCCTTGCCCGAGATTCCGGCGGCGCGCCATGACGAGGTCATGGCGTTCCTTGGCAACGAGCGCTTGTTCGGCCTC
GGGATCGGCTATGTCGATCTTCACTTGCTTGCCGCGACTCGCCTCGCCGTTGGCACGAAGCTATGGACACGCGATCGACG
CCTTCTTCAAGCGGCACTGAAATTTAACCTGGCTGCGTTCGCCGCACATTGA
Antitoxin
Download Length: 84 a.a. Molecular weight: 9433.60 Da Isoelectric Point: 4.3407
>AT236479 WP_000584499.1 NZ_CP092538:c2442702-2442451 [Staphylococcus aureus]
MIIKNYSYARQNLKALMTKVNDDSDMVTVTSTDDKNVVIMSESDYNSMMETLYLQQNPNNAEHLAQSIADLERGKTITKD
IDV
MIIKNYSYARQNLKALMTKVNDDSDMVTVTSTDDKNVVIMSESDYNSMMETLYLQQNPNNAEHLAQSIADLERGKTITKD
IDV
Download Length: 252 bp
>AT236479 NZ_LR594675:c1985100-1984891 [Variovorax sp. PBS-H4]
ATGCGCACCACCGTCACCTTGGACGACGAGCTGCTCTCTCAAGCTCGGACATTCACGGGCATCCAGGAGAACTCCGCGCT
GATCCAACAGGCGCTCAAAACCCTTGTCCAGAGGGAAGCCGCCCGTCGGCTGGCGCGCTTGGGAGGCAGCGCGCCGGGCC
TCCAGGCTGCGCCGAGACGCCGGGGAAAAGGCGCGAATGATCCTCGTTGA
ATGCGCACCACCGTCACCTTGGACGACGAGCTGCTCTCTCAAGCTCGGACATTCACGGGCATCCAGGAGAACTCCGCGCT
GATCCAACAGGCGCTCAAAACCCTTGTCCAGAGGGAAGCCGCCCGTCGGCTGGCGCGCTTGGGAGGCAGCGCGCCGGGCC
TCCAGGCTGCGCCGAGACGCCGGGGAAAAGGCGCGAATGATCCTCGTTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|