Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) higBA (relBE)/COG4683-HTH_37
Location 3498215..3498885 Replicon chromosome
Accession NC_012207
Organism Mycobacterium bovis BCG str. Tokyo 172

Toxin (Protein)


Gene name higB Uniprot ID O53332
Locus tag JTY_RS16485 Protein ID WP_003899954.1
Coordinates 3498215..3498559 (+) Length 115 a.a.

Antitoxin (Protein)


Gene name higA Uniprot ID G0THF6
Locus tag JTY_RS16490 Protein ID WP_003899955.1
Coordinates 3498556..3498885 (+) Length 110 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
JTY_RS16455 3493288..3494148 + 861 WP_003416628.1 alpha/beta hydrolase -
JTY_RS16460 3494123..3494638 + 516 WP_003899950.1 nitroreductase family deazaflavin-dependent oxidoreductase -
JTY_RS16465 3494878..3495171 + 294 WP_003416635.1 hypothetical protein -
JTY_RS16470 3495459..3496748 + 1290 WP_003416640.1 ATP-binding protein -
JTY_RS16475 3497095..3497529 - 435 WP_003899952.1 type II toxin-antitoxin system VapC family toxin -
JTY_RS16480 3497532..3497984 - 453 WP_003899953.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
JTY_RS16485 3498215..3498559 + 345 WP_003899954.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
JTY_RS16490 3498556..3498885 + 330 WP_003899955.1 XRE family transcriptional regulator Antitoxin
JTY_RS16495 3499423..3499770 + 348 WP_003899956.1 DUF2384 domain-containing protein -
JTY_RS16500 3499767..3500387 + 621 WP_003899957.1 RES family NAD+ phosphorylase -
JTY_RS16505 3500547..3501812 - 1266 WP_003909837.1 hypothetical protein -
JTY_RS16510 3501980..3502189 + 210 WP_003416778.1 hypothetical protein -
JTY_RS16520 3502436..3503470 - 1035 WP_003416786.1 IS30 family transposase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin HigB-like

(12-103)

Antitoxin

Cro/C1-type helix-turn-helix domain

(38-91)


Sequences

Toxin        


Download         Length: 115 a.a.        Molecular weight: 12692.50 Da        Isoelectric Point: 5.6920

>T23641 WP_003899954.1 NC_012207:3498215-3498559 [Mycobacterium tuberculosis variant bovis BCG str. Tokyo 172]
MAVILLPQVERWFFALNRDAMASVTGAIDLLEMEGPTLGRPVVDKVNDSTFHNMKELRPAGTSIRILFAFDPARQAILLL
GGDKAGNWKRWYDNNIPIADQRSENWLASEHGGG

Download         Length: 345 bp

>T23641 NC_012207:3498215-3498559 [Mycobacterium tuberculosis variant bovis BCG str. Tokyo 172]
TTGGCCGTGATCCTGCTCCCGCAGGTCGAACGGTGGTTCTTCGCGCTCAACAGGGATGCGATGGCCTCGGTCACCGGCGC
CATCGACCTGCTCGAAATGGAGGGGCCGACGTTGGGCCGCCCGGTGGTCGACAAAGTGAACGACTCAACGTTTCACAACA
TGAAGGAGCTGCGCCCCGCCGGCACCAGCATCCGGATCCTGTTCGCCTTCGACCCGGCCCGGCAGGCGATCCTGCTGCTG
GGCGGTGACAAGGCAGGCAACTGGAAACGCTGGTACGACAACAACATTCCAATCGCTGACCAGCGCTCCGAGAACTGGCT
GGCGAGCGAGCACGGAGGTGGATGA

Antitoxin


Download         Length: 110 a.a.        Molecular weight: 11802.46 Da        Isoelectric Point: 7.4051

>AT23641 WP_003899955.1 NC_012207:3498556-3498885 [Mycobacterium tuberculosis variant bovis BCG str. Tokyo 172]
MTMARNWRDIRADAVAQGRVDLQRAAVAREEMRDAVLAHRLAEIRKALGHARQADVAALMGVSQARVSKLESGDLSHTEL
GTLQAYVAALGGHLRIVAEFGENTVELTA

Download         Length: 330 bp

>AT23641 NC_012207:3498556-3498885 [Mycobacterium tuberculosis variant bovis BCG str. Tokyo 172]
ATGACCATGGCCCGCAACTGGCGTGACATTCGCGCCGATGCCGTCGCGCAGGGCCGCGTGGATCTGCAGCGGGCCGCCGT
GGCACGCGAGGAGATGCGCGATGCCGTCCTGGCGCACCGCCTGGCCGAGATCCGCAAGGCGCTAGGCCACGCACGTCAGG
CCGACGTCGCGGCGCTGATGGGGGTCTCTCAGGCCCGTGTCTCCAAGCTGGAGAGCGGCGACCTGTCCCACACCGAACTC
GGCACCCTGCAGGCCTACGTTGCCGCCCTGGGCGGGCACCTGCGCATCGTCGCTGAGTTCGGCGAAAATACTGTCGAGCT
GACCGCCTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A7U4FBK2

Antitoxin

Source ID Structure
PDB 6LTY
PDB 6LTZ
AlphaFold DB G0THF6

References