Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | yefM-yoeB (relBE)/YoeB-YefM |
| Location | 1839611..1840113 | Replicon | chromosome |
| Accession | NZ_CP092252 | ||
| Organism | Escherichia coli strain ISHS7 | ||
Toxin (Protein)
| Gene name | yoeB | Uniprot ID | U9YDH0 |
| Locus tag | MF614_RS08895 | Protein ID | WP_000767829.1 |
| Coordinates | 1839859..1840113 (+) | Length | 85 a.a. |
Antitoxin (Protein)
| Gene name | yefM | Uniprot ID | S1Q063 |
| Locus tag | MF614_RS08890 | Protein ID | WP_001259255.1 |
| Coordinates | 1839611..1839862 (+) | Length | 84 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MF614_RS08865 (1834789) | 1834789..1835856 | - | 1068 | WP_000080093.1 | bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB | - |
| MF614_RS08870 (1835856) | 1835856..1836926 | - | 1071 | WP_062875581.1 | histidinol-phosphate transaminase | - |
| MF614_RS08875 (1836923) | 1836923..1838227 | - | 1305 | WP_001376955.1 | histidinol dehydrogenase | - |
| MF614_RS08880 (1838233) | 1838233..1839132 | - | 900 | WP_000131782.1 | ATP phosphoribosyltransferase | - |
| MF614_RS08885 (1839278) | 1839278..1839328 | - | 51 | WP_001364200.1 | his operon leader peptide | - |
| MF614_RS08890 (1839611) | 1839611..1839862 | + | 252 | WP_001259255.1 | YoeB-YefM toxin-antitoxin system antitoxin YefM | Antitoxin |
| MF614_RS08895 (1839859) | 1839859..1840113 | + | 255 | WP_000767829.1 | type II toxin-antitoxin system mRNA interferase toxin YoeB | Toxin |
| MF614_RS08900 (1840196) | 1840196..1841020 | + | 825 | WP_136719778.1 | SDR family oxidoreductase | - |
| MF614_RS08905 (1841066) | 1841066..1841995 | + | 930 | WP_000803351.1 | LysR substrate-binding domain-containing protein | - |
| MF614_RS08910 (1842210) | 1842210..1842272 | + | 63 | WP_010723108.1 | membrane protein YoeI | - |
| MF614_RS08915 (1842262) | 1842262..1843620 | + | 1359 | WP_000019197.1 | putrescine/proton symporter PlaP | - |
| MF614_RS08920 (1843799) | 1843799..1844857 | + | 1059 | WP_000492310.1 | thiosulfate utilization transporter TsuA/YeeE | - |
| MF614_RS08925 (1844871) | 1844871..1845098 | + | 228 | WP_000985273.1 | thiosulfate utilization sulfurtransferase TsuB/YeeD | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 85 a.a. Molecular weight: 10183.58 Da Isoelectric Point: 8.0353
>T235802 WP_000767829.1 NZ_CP092252:1839859-1840113 [Escherichia coli]
VKLIWSEESWDDYLYWQETDKRIVKKINELIKDTRRTPFEGKGKPEPLKHNLSGFWSRRITEEHRLVYAVTDDSLLIAAC
RYHY
VKLIWSEESWDDYLYWQETDKRIVKKINELIKDTRRTPFEGKGKPEPLKHNLSGFWSRRITEEHRLVYAVTDDSLLIAAC
RYHY
Download Length: 255 bp
>T235802 NZ_LR134363:3168334-3168657 [Actinomyces slackii]
ATGCTGCGGGGTGAGGTGTGGACTCTTAGGGACAAGGCATACGCAGCCAAAGCCAGGCCCGTCATCGTCGTTCAAGATGA
GACTGTGGCGTCATTTGACTCGATCATCCTGTGCCTGCTGACAACATTCGATATGAAGGACGCCCCTACACGGGTCCGTA
TCGATCCAGATGAGAACAATGGACTCATGAAAACTAGCTACGCCATGACCGATAAGATCGTGACTGTGGACAAGAAAATG
CTAGGAGAGCGCGTCGGCACGATTGAGACGACGCAGATGAATGCCATCTCCACTCAACTCGCGCGCTTGCTTGGGATCAC
ATAG
ATGCTGCGGGGTGAGGTGTGGACTCTTAGGGACAAGGCATACGCAGCCAAAGCCAGGCCCGTCATCGTCGTTCAAGATGA
GACTGTGGCGTCATTTGACTCGATCATCCTGTGCCTGCTGACAACATTCGATATGAAGGACGCCCCTACACGGGTCCGTA
TCGATCCAGATGAGAACAATGGACTCATGAAAACTAGCTACGCCATGACCGATAAGATCGTGACTGTGGACAAGAAAATG
CTAGGAGAGCGCGTCGGCACGATTGAGACGACGCAGATGAATGCCATCTCCACTCAACTCGCGCGCTTGCTTGGGATCAC
ATAG
Antitoxin
Download Length: 84 a.a. Molecular weight: 9307.58 Da Isoelectric Point: 4.7954
>AT235802 WP_001259255.1 NZ_CP092252:1839611-1839862 [Escherichia coli]
MRTISYSEARQNLSATMMKAVEDHAPILITRQNGEACVLMSLEEYNSLEETAYLLRSPANARRLMDSIDSLKSGKGTEKD
IIE
MRTISYSEARQNLSATMMKAVEDHAPILITRQNGEACVLMSLEEYNSLEETAYLLRSPANARRLMDSIDSLKSGKGTEKD
IIE
Download Length: 252 bp
>AT235802 NZ_LR134363:3168099-3168347 [Actinomyces slackii]
ATGGCGCTCAAGCAAGCCACGACGCGAATTGAGGACGATGAGTATGAGTTGTTCCGTGCGACGACGCGGGCATTAGGCAC
CACGCCTGCGGACGCGTTGCGCATGTTCATTTATGCATTCAATGAGCATCGAGGATTTCCTTACGACGTGCGCACATCTA
AGCCCACCTTGGAGGCATTCGAGACGGAAGAGGATGCCACCCGCTTCGCAACAGAACTTGCACTGGGAGTAGCGGATGCT
GCGGGGTGA
ATGGCGCTCAAGCAAGCCACGACGCGAATTGAGGACGATGAGTATGAGTTGTTCCGTGCGACGACGCGGGCATTAGGCAC
CACGCCTGCGGACGCGTTGCGCATGTTCATTTATGCATTCAATGAGCATCGAGGATTTCCTTACGACGTGCGCACATCTA
AGCCCACCTTGGAGGCATTCGAGACGGAAGAGGATGCCACCCGCTTCGCAACAGAACTTGCACTGGGAGTAGCGGATGCT
GCGGGGTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|