Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yafN-yafO (relBE)/YafO-YafN
Location 2075661..2076364 Replicon chromosome
Accession NZ_CP092106
Organism Vibrio sp. JC009

Toxin (Protein)


Gene name yafO Uniprot ID -
Locus tag L3Q72_RS09205 Protein ID WP_275129654.1
Coordinates 2075951..2076364 (+) Length 138 a.a.

Antitoxin (Protein)


Gene name yafN Uniprot ID -
Locus tag L3Q72_RS09200 Protein ID WP_275129653.1
Coordinates 2075661..2075954 (+) Length 98 a.a.

Genomic Context

L3Q72_RS09180L3Q72_RS09190L3Q72_RS09195L3Q72_RS09200L3Q72_RS09205L3Q72_RS09175L3Q72_RS09185L3Q72_RS09210L3Q72_RS09215L3Q72_RS09220L3Q72_RS09225L3Q72_RS09230
Location: 2072578..2073477 (900 bp)
Type: Others
Protein ID: WP_275129649.1
Location: 2074582..2075145 (564 bp)
Type: Others
Protein ID: WP_275129651.1
Location: 2075138..2075497 (360 bp)
Type: Others
Protein ID: WP_275129652.1
Location: 2075661..2075954 (294 bp)
Type: Antitoxin
Protein ID: WP_275129653.1
Location: 2075951..2076364 (414 bp)
Type: Toxin
Protein ID: WP_275129654.1
Location: 2071558..2072478 (921 bp)
Type: Others
Protein ID: WP_275129648.1
Location: 2073557..2074450 (894 bp)
Type: Others
Protein ID: WP_275129650.1
Location: 2076424..2077713 (1290 bp)
Type: Others
Protein ID: WP_275129655.1
Location: 2078053..2078595 (543 bp)
Type: Others
Protein ID: WP_275129656.1
Location: 2078684..2079538 (855 bp)
Type: Others
Protein ID: WP_275129657.1
Location: 2079618..2080208 (591 bp)
Type: Others
Protein ID: WP_275129658.1
Location: 2080225..2080611 (387 bp)
Type: Others
Protein ID: WP_275132093.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
L3Q72_RS09175 (L3Q72_09165)2071558..2072478-921WP_275129648.1hypothetical protein-
L3Q72_RS09180 (L3Q72_09170)2072578..2073477+900WP_275129649.1LysR family transcriptional regulator-
L3Q72_RS09185 (L3Q72_09175)2073557..2074450-894WP_275129650.1haloalkane dehalogenase-
L3Q72_RS09190 (L3Q72_09180)2074582..2075145+564WP_275129651.1TetR/AcrR family transcriptional regulator-
L3Q72_RS09195 (L3Q72_09185)2075138..2075497+360WP_275129652.1MmcQ/YjbR family DNA-binding protein-
L3Q72_RS09200 (L3Q72_09190)2075661..2075954+294WP_275129653.1hypothetical proteinAntitoxin
L3Q72_RS09205 (L3Q72_09195)2075951..2076364+414WP_275129654.1type II toxin-antitoxin system YafO family toxinToxin
L3Q72_RS09210 (L3Q72_09200)2076424..2077713-1290WP_275129655.1NAD(P)/FAD-dependent oxidoreductase-
L3Q72_RS09215 (L3Q72_09205)2078053..2078595-543WP_275129656.1alpha/beta hydrolase YcfP-
L3Q72_RS09220 (L3Q72_09210)2078684..2079538-855WP_275129657.1phosphotransferase-
L3Q72_RS09225 (L3Q72_09215)2079618..2080208-591WP_275129658.1penicillin-binding protein activator LpoB-
L3Q72_RS09230 (L3Q72_09220)2080225..2080611-387WP_275132093.1YcfL family protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

mRNA interferase toxin YafO

(34-135)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 138 a.a.        Molecular weight: 15917.27 Da        Isoelectric Point: 7.1165

>T235709 WP_275129654.1 NZ_CP092106:2075951-2076364 [Vibrio sp. JC009]
VSDKLLKVRVFKHKILIDALTKDELEGLTKDFRVYKETGQKPDIFGRDEAYDHPDTLPILKSEEVKHIHLSANDAPFLSK
IQFYQTSDKHLVYCQGWEDPNCFLLIAILAPNAHEQARNRTIMHNLGLIAEKFRQQF

Download         Length: 414 bp

>T235709 NZ_LR134333:1188547-1188957 [Klebsiella oxytoca]
GTGGTCCTGTGGCAATCTGATTTACGCATCTCGTGGCGAGCGCAATGGTTCTCACTGTTGATGCACGGCGTGGTGGCGGC
GCTGGTGCTGGTGTTGCCCTGGCCGCTGAGCTATACCCCGCTGTGGCTGATACTGCTGTCGCTGGTGGTGTTCGACTGCG
TGCGCAGCCAGCGGCGGATCCATGCCAGACAGGGGGAAATAAAGTTGCTGATTGACTCTCGCCTGCGCTGGCAAAAAGCG
GAGTGGGATATCGTCGGCACCCCGTGGGTAATCAATAGCGGAATGCTGCTGCGTCTGCGAAATACGGAAAACCAACGCAC
TCAGCATCTATGGGTGGCGGCGGATAGCATGGACGCGGGCGAGTGGCGCGATCTGCGTCGGCTGGTGTTACAGAAACCGA
CGCAAGATTAA

Antitoxin


Download         Length: 98 a.a.        Molecular weight: 10561.90 Da        Isoelectric Point: 4.4915

>AT235709 WP_275129653.1 NZ_CP092106:2075661-2075954 [Vibrio sp. JC009]
MKTSTIYAEKAVSSSEARKHFKDCLSGEPVVVLSNNEPAGYMMSATFFEGLMKALEGKGTDSISSFRPMSARLDVIAHLN
AQALAELDENDLGEFQE

Download         Length: 294 bp

>AT235709 NZ_LR134333:1188300-1188566 [Klebsiella oxytoca]
ATGGATATTAACAATAAAGCTCGCATCCACTGGGCATGCCGCCGGGGAATGCGTGAACTCGATATCTCCATCATGCCGTT
TTTTGAGCATGAGTACGATACGCTCAGTGATGACGATAAGCGGTTGTTCATCCGCCTGCTGGAAAATGACGATCCGGACC
TGTTCAACTGGTTGATGAACCATGGCGAACCGGCTGATGCAGAACTGCAGCGGATGGTAAAATTAATTCAGACACGGAAT
CGGGAACGTGGTCCTGTGGCAATCTGA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References