Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | yefM-yoeB (relBE)/YoeB-YefM |
| Location | 1937221..1937723 | Replicon | chromosome |
| Accession | NZ_CP091534 | ||
| Organism | Escherichia coli strain 537-20 | ||
Toxin (Protein)
| Gene name | yoeB | Uniprot ID | U9YDH0 |
| Locus tag | L6D13_RS09225 | Protein ID | WP_000767829.1 |
| Coordinates | 1937469..1937723 (+) | Length | 85 a.a. |
Antitoxin (Protein)
| Gene name | yefM | Uniprot ID | S1Q063 |
| Locus tag | L6D13_RS09220 | Protein ID | WP_001259255.1 |
| Coordinates | 1937221..1937472 (+) | Length | 84 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L6D13_RS09195 (1932399) | 1932399..1933466 | - | 1068 | WP_000080093.1 | bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB | - |
| L6D13_RS09200 (1933466) | 1933466..1934536 | - | 1071 | WP_001362957.1 | histidinol-phosphate transaminase | - |
| L6D13_RS09205 (1934533) | 1934533..1935837 | - | 1305 | WP_001774536.1 | histidinol dehydrogenase | - |
| L6D13_RS09210 (1935843) | 1935843..1936742 | - | 900 | WP_000131782.1 | ATP phosphoribosyltransferase | - |
| L6D13_RS09215 (1936888) | 1936888..1936938 | - | 51 | WP_001364200.1 | his operon leader peptide | - |
| L6D13_RS09220 (1937221) | 1937221..1937472 | + | 252 | WP_001259255.1 | YoeB-YefM toxin-antitoxin system antitoxin YefM | Antitoxin |
| L6D13_RS09225 (1937469) | 1937469..1937723 | + | 255 | WP_000767829.1 | type II toxin-antitoxin system mRNA interferase toxin YoeB | Toxin |
| L6D13_RS09230 (1937806) | 1937806..1938630 | + | 825 | WP_000754758.1 | SDR family oxidoreductase | - |
| L6D13_RS09235 (1938676) | 1938676..1939605 | + | 930 | WP_000803351.1 | LysR substrate-binding domain-containing protein | - |
| L6D13_RS09240 (1939820) | 1939820..1939882 | + | 63 | WP_010723108.1 | membrane protein YoeI | - |
| L6D13_RS09245 (1939872) | 1939872..1941230 | + | 1359 | WP_000019197.1 | putrescine/proton symporter PlaP | - |
| L6D13_RS09250 (1941409) | 1941409..1942467 | + | 1059 | WP_000492315.1 | thiosulfate utilization transporter TsuA/YeeE | - |
| L6D13_RS09255 (1942481) | 1942481..1942708 | + | 228 | WP_000985273.1 | thiosulfate utilization sulfurtransferase TsuB/YeeD | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 85 a.a. Molecular weight: 10183.58 Da Isoelectric Point: 8.0353
>T233546 WP_000767829.1 NZ_CP091534:1937469-1937723 [Escherichia coli]
VKLIWSEESWDDYLYWQETDKRIVKKINELIKDTRRTPFEGKGKPEPLKHNLSGFWSRRITEEHRLVYAVTDDSLLIAAC
RYHY
VKLIWSEESWDDYLYWQETDKRIVKKINELIKDTRRTPFEGKGKPEPLKHNLSGFWSRRITEEHRLVYAVTDDSLLIAAC
RYHY
Download Length: 255 bp
>T233546 NZ_HG992341:c5015569-5015288 [Xanthomonas arboricola pv. corylina]
ATGATCAGGAGCTTTGTCGACAAGGAAGCCGAAAAGATCTGGATGGGTGAGCGCTCCCGCCGGTTGCCGGCCGACATCCA
GTCGGTCGCGCGCCGCAAGTTGCGCATGCTCAACGCTGCCGCGCACCTCGACGATCTGCGCATTCCGCCCGCCAACCGGC
TGGAAGCGTTGAAGGGCGAGCGGCGCGGGCAGTACAGCATCCGGATCAACGACCAGTGGCGCATCTGCTTCCGATGGATG
GAGGGCGATGTCGCCGAGGTCGAAATTGTTGATTACCACTGA
ATGATCAGGAGCTTTGTCGACAAGGAAGCCGAAAAGATCTGGATGGGTGAGCGCTCCCGCCGGTTGCCGGCCGACATCCA
GTCGGTCGCGCGCCGCAAGTTGCGCATGCTCAACGCTGCCGCGCACCTCGACGATCTGCGCATTCCGCCCGCCAACCGGC
TGGAAGCGTTGAAGGGCGAGCGGCGCGGGCAGTACAGCATCCGGATCAACGACCAGTGGCGCATCTGCTTCCGATGGATG
GAGGGCGATGTCGCCGAGGTCGAAATTGTTGATTACCACTGA
Antitoxin
Download Length: 84 a.a. Molecular weight: 9307.58 Da Isoelectric Point: 4.7954
>AT233546 WP_001259255.1 NZ_CP091534:1937221-1937472 [Escherichia coli]
MRTISYSEARQNLSATMMKAVEDHAPILITRQNGEACVLMSLEEYNSLEETAYLLRSPANARRLMDSIDSLKSGKGTEKD
IIE
MRTISYSEARQNLSATMMKAVEDHAPILITRQNGEACVLMSLEEYNSLEETAYLLRSPANARRLMDSIDSLKSGKGTEKD
IIE
Download Length: 252 bp
>AT233546 NZ_HG992341:c5015270-5014980 [Xanthomonas arboricola pv. corylina]
ATGACAGTCCTACCCAACATCCACCCTGGCGAAATCCTGCGCGAAGAGTTCCTCGAGCCGATGGGCATCAGCCAGAACGC
GCTGGCGCGGGCCACCGGCGTACCGCCGCGTCGCATCAACGAGATCGTCCTGGGCAAGCGCGGCATCACCGCCGACACCG
CCGTGCGCCTGGCTGCAGCGCTGGGCACGACCGAGCGCTTCTGGCTGAGCCTGCAAGCCGATTACGAGCTGGAACAGGCA
CACCGCGCGCTGGGCGATCTGCCGTCGCGGATCAAGCGGCTGGCGGCTTGA
ATGACAGTCCTACCCAACATCCACCCTGGCGAAATCCTGCGCGAAGAGTTCCTCGAGCCGATGGGCATCAGCCAGAACGC
GCTGGCGCGGGCCACCGGCGTACCGCCGCGTCGCATCAACGAGATCGTCCTGGGCAAGCGCGGCATCACCGCCGACACCG
CCGTGCGCCTGGCTGCAGCGCTGGGCACGACCGAGCGCTTCTGGCTGAGCCTGCAAGCCGATTACGAGCTGGAACAGGCA
CACCGCGCGCTGGGCGATCTGCCGTCGCGGATCAAGCGGCTGGCGGCTTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|