Detailed information of TA system TA023351

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): yafN-yafO (relBE)/YafO-YafN
• Location: 284003..284697
• Replicon: chromosome
• Accession: NC_011742
• Organism: Escherichia coli S88

Toxin (Protein)

• Gene name: yafO
• Uniprot ID: S1PJQ2
• Locus tag: ECS88_RS02205
• Protein ID: WP_001263500.1
• Coordinates: 284299..284697 (+)
• Length: 133 a.a.

Antitoxin (Protein)

• Gene name: yafN
• Uniprot ID: S1QAE3
• Locus tag: ECS88_RS02200
• Protein ID: WP_000554758.1
• Coordinates: 284003..284296 (+)
• Length: 98 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
ECS88_RS02180	279539..280036	+	498	WP_000006241.1	REP-associated tyrosine transposase RayT	-
ECS88_RS27160	280119..280277	-	159	WP_014639450.1	hypothetical protein	-
ECS88_RS02185	280356..282068	-	1713	Protein_253	flagellar biosynthesis protein FlhA	-
ECS88_RS02190	282040..282825	+	786	WP_000207544.1	putative lateral flagellar export/assembly protein LafU	-
ECS88_RS02195	282896..283951	+	1056	WP_001226168.1	DNA polymerase IV	-
ECS88_RS02200	284003..284296	+	294	WP_000554758.1	type I toxin-antitoxin system antitoxin YafN	Antitoxin
ECS88_RS02205	284299..284697	+	399	WP_001263500.1	type II toxin-antitoxin system mRNA interferase toxin YafO	Toxin
ECS88_RS02210	284707..285159	+	453	WP_001059895.1	GNAT family N-acetyltransferase	-
ECS88_RS02215	285349..286488	+	1140	WP_000521577.1	RNA ligase RtcB family protein	-
ECS88_RS02220	286485..287099	+	615	WP_000602123.1	peptide chain release factor H	-
ECS88_RS02225	287156..288613	-	1458	WP_001292999.1	cytosol nonspecific dipeptidase	-
ECS88_RS02230	288874..289332	+	459	WP_001291988.1	xanthine phosphoribosyltransferase	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)
	-	inside	Genomic island	-	gmhA/lpcA	264478..285159	20681

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• mRNA interferase toxin YafO (27-130)

Antitoxin

No domain identified.

Sequences

Toxin

Protein

• Length: 133 a.a.
• Molecular weight: 15413.85 Da
• Isoelectric Point: 8.9511

>T23351 WP_001263500.1 NC_011742:284299-284697 [Escherichia coli S88]
MRVFKTKLIRLQLTAEELEALTADFISYKRDGVLPDIFGRDALYDDSFTWPLIKFERVAHIHLANVNNPFPPQLRQFSRT
NDAAHLVYCQGAFDEQAWLLIAILKPEPHKLARDNNQMHKIGKMAEAFRMRF

Nucleotide

• Length: 399 bp

>T23351 NC_011742:284299-284697 [Escherichia coli S88]
ATGCGGGTATTCAAAACAAAACTTATTCGCCTGCAACTTACAGCAGAGGAACTTGAAGCGTTAACGGCGGATTTTATTTC
CTATAAGCGTGACGGTGTTTTGCCAGATATATTTGGTCGTGATGCACTCTACGACGACTCGTTTACCTGGCCATTAATCA
AATTTGAGCGAGTTGCTCATATTCATCTGGCAAATGTGAATAATCCATTTCCGCCACAGTTGCGCCAATTCAGCAGAACG
AATGACGCAGCGCATTTGGTATATTGTCAGGGCGCGTTTGATGAGCAAGCATGGTTGCTCATTGCCATTCTGAAACCTGA
ACCTCATAAACTGGCTCGAGATAACAACCAAATGCATAAAATTGGGAAAATGGCAGAAGCGTTTCGCATGCGTTTTTGA

Antitoxin

Protein

• Length: 98 a.a.
• Molecular weight: 11233.76 Da
• Isoelectric Point: 5.2170

>AT23351 WP_000554758.1 NC_011742:284003-284296 [Escherichia coli S88]
MHRILAEKSVNITELRKNPAKYFIDQPVAVLSNNRPAGYLLSASAFEALMDMLAEQEEKKPIKARFRPSAARLEEITRRA
EQYLNDMTDDDFNDFKE

Nucleotide

• Length: 294 bp

>AT23351 NC_011742:284003-284296 [Escherichia coli S88]
ATGCATCGAATTCTCGCTGAAAAATCGGTCAATATCACTGAGTTACGTAAAAACCCAGCTAAATACTTTATTGATCAACC
TGTTGCGGTTCTTTCTAATAATCGCCCCGCAGGATATCTCTTAAGTGCCAGCGCATTTGAAGCATTAATGGACATGCTTG
CAGAACAAGAGGAGAAAAAGCCCATAAAGGCGCGCTTCCGTCCGAGTGCTGCAAGATTAGAGGAAATTACACGCCGCGCT
GAACAATATCTTAATGATATGACGGATGATGATTTCAATGACTTTAAGGAATAA

Structures

Toxin

• AlphaFold DB: S1PJQ2

Antitoxin

• AlphaFold DB: S1QAE3