Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) prlF-yhaV (relBE)/YhaV-PrlF
Location 149681..150502 Replicon plasmid p1
Accession NZ_CP091097
Organism Pantoea agglomerans strain Pa58

Toxin (Protein)


Gene name yhaV Uniprot ID -
Locus tag LZ609_RS00760 Protein ID WP_010670281.1
Coordinates 150032..150502 (+) Length 157 a.a.

Antitoxin (Protein)


Gene name prlF Uniprot ID -
Locus tag LZ609_RS00755 Protein ID WP_089414818.1
Coordinates 149681..150025 (+) Length 115 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
LZ609_RS00735 (LZ609_00735) 145682..146791 + 1110 WP_010247360.1 maltose/maltodextrin ABC transporter ATP-binding protein MalK -
LZ609_RS00740 (LZ609_00740) 146835..148136 + 1302 WP_033760237.1 maltoporin -
LZ609_RS00745 (LZ609_00745) 148239..149177 + 939 WP_163641413.1 maltose operon protein MalM -
LZ609_RS00750 (LZ609_00750) 149366..149581 + 216 WP_010670279.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
LZ609_RS00755 (LZ609_00755) 149681..150025 + 345 WP_089414818.1 type II toxin-antitoxin system PrlF family antitoxin Antitoxin
LZ609_RS00760 (LZ609_00760) 150032..150502 + 471 WP_010670281.1 type II toxin-antitoxin system YhaV family toxin Toxin
LZ609_RS00765 (LZ609_00765) 150690..152765 - 2076 WP_245115216.1 4-alpha-glucanotransferase -
LZ609_RS00770 (LZ609_00770) 152774..155176 - 2403 WP_245115217.1 maltodextrin phosphorylase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Non-Mobilizable plasmid - iroN 1..554101 554101


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin endonuclease, YhaV

(13-148)

Antitoxin

PrlF antitoxin

(15-113)


Sequences

Toxin        


Download         Length: 157 a.a.        Molecular weight: 18238.78 Da        Isoelectric Point: 8.9262

>T232717 WP_010670281.1 NZ_CP091097:150032-150502 [Pantoea agglomerans]
MEDSTVINGWHVYVPPCFESQLIALTNEVELLRAKYPESYQRKATTKLLAAVFKVINSEICADPHQAKFRQGDTLGEQNK
HWFRAKFLMQYRLFFRFSEQHKTIILAWMNDAETKRAYGSKRDAYKVFSGMLHNGYPPDDWALLLKQSQDWANTNS

Download         Length: 471 bp

>T232717 NZ_CP128182:266417-266719 [Stenotrophomonas maltophilia]
ATGGCTATCAAGAAGAAAGTTGAACTCGAAGCATTTGATGTGGCCGAACACCTTCATACACCGAAGGAAATGGCGGCCTA
TCTCGATGCATGCATCGAAGAAAGCGACGGCGATTCGGCATTCATCGCCAAGGCGCTGGGCGATATCGCGCGTGCCCAAG
GGATGAGCAAGGTCGCACGTGCGGCGGGCCTGTCGCGGGAGAGTCTGTATCGTGCCCTGTCTGGCGAGCGCAGCCCTGAT
TTCTCGACCATCCTGAAGGTGACTCGTGCCCTGGGTGTGCGCCTGCATGCCAGCGCTGCATGA

Antitoxin


Download         Length: 115 a.a.        Molecular weight: 12252.00 Da        Isoelectric Point: 4.7969

>AT232717 WP_089414818.1 NZ_CP091097:149681-150025 [Pantoea agglomerans]
MGTLTHANISLRASSKLTARGQTTIPAAVRDAMNLQPGENIEYAVLPGGKVLITRQETVADDAPVKASFLSFLPADRRNT
AANIKMLDRGLLTRITSLTEGMDVDLDAPLMDDE

Download         Length: 345 bp

>AT232717 NZ_CP128182:266071-266376 [Stenotrophomonas maltophilia]
ATGAAGATCCAGCGTACCCGTCAGTTCGCGACATGGATTGACGCTCTCAAGGACGTAACCGCACGCGCTCGCATCCTGGC
CCGTATCGGTCGGCTCGCTGAAGGCCATCCTGGTGATCACCGCTATCTGGCGGATGGCGTTTCTGAATTGCGTATCGATG
CAGGACCCGGTTACCGCGTGTACTACACCCAGCGGGGCAGGCAGTTGGTGATTCTTCTGGTCGGAGGCGACAAGGGTTCG
CAACAGCGCGATATAGAGAAGGCCAAGGAGATTGCGCGTGCCCTGCGAGCATCGAACTGGTTGTAG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References